Structure of PDB 4v6s Chain AG

Receptor sequence

>4v6sAG (length=178) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFRK

3D structure

PDB

4v6s Structural characterization of mRNA-tRNA translocation intermediates.

Chain

Resolution

13.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	AG	A1 D5 K8 S23 V24 M25 R29 E31 K32 K87 R91 W96 K160	A1 D5 K8 S23 V24 M25 R29 E31 K32 K87 R91 W96 K160
BS02	rna	AG	T34 N36 M37 G38 V39 E41 T67 K68 A69 R70 K71 F76 I84 K87 S120 D122 R124 N126 Y127 S128 R132 V148 G150 D152 T156	T34 N36 M37 G38 V39 E41 T67 K68 A69 R70 K71 F76 I84 K87 S120 D122 R124 N126 Y127 S128 R132 V148 G150 D152 T156
BS03	rna	AG	F76 K77 I78	F76 K77 I78

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:4v6s, PDBe:4v6s, PDBj:4v6s
PDBsum	4v6s
PubMed	22467828
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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