Structure of PDB 4v4f Chain AG

Receptor sequence
>4v4fAG (length=70) Species: 1422 (Geobacillus stearothermophilus) [Search protein sequence]
TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSA
IKVRGKAYIQTRHGVIESEG
3D structure
PDB4v4f The Interaction of RNA with Trap: The Role of Triplet Repeats and Separating Spacer Nucleotides
ChainAG
Resolution1.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna AG F32 K56 F28 K52
BS02 rna AG H34 E36 K37 H30 E32 K33
BS03 TRP AG R26 G27 T30 S53 R22 G23 T26 S49
BS04 TRP AG G23 Q47 T49 T52 G19 Q43 T45 T48
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0006353 DNA-templated transcription termination
GO:0006355 regulation of DNA-templated transcription

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4v4f, PDBe:4v4f, PDBj:4v4f
PDBsum4v4f
PubMed15050822
UniProtQ9X6J6|MTRB_GEOSE Transcription attenuation protein MtrB (Gene Name=mtrB)

[Back to BioLiP]