Structure of PDB 4v5b Chain AF

Receptor sequence
>4v5bAF (length=178) Species: 562 (Escherichia coli) [Search protein sequence]
AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFRK
3D structure
PDB4v5b A Peptide Deformylase-Ribosome Complex Reveals Mechanism of Nascent Chain Processing.
ChainAF
Resolution3.74 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna AF S23 M25 Q26 Q62 K63 L65 V88 T89 R91 S23 M25 Q26 Q62 K63 L65 V88 T89 R91
BS02 rna AF K32 T34 N36 M37 V39 T67 K68 A69 R70 A74 G75 F76 I84 K87 D122 S128 R149 D152 T156 K32 T34 N36 M37 V39 T67 K68 A69 R70 A74 G75 F76 I84 K87 D122 S128 R149 D152 T156
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4v5b, PDBe:4v5b, PDBj:4v5b
PDBsum4v5b
PubMed18288106
UniProtP62399|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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