Structure of PDB 9cai Chain AE

Receptor sequence

>9caiAE (length=255) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

MRGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNR
LKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRM
LYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPD
PHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERL
PGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEE
RDKRM

3D structure

PDB

9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.59 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AE	M1 R2 G3 P4 K6 H7 K9 L11 M18 K21 G24 F26 V28 R29 P32 G33 P34 K36 R38 R48 N56 Y57 T58 K61 H79 K80 F81 K105 R107 K126 R129 T130 N132 K133 G134 T145 R147 Q166 G185 A218 R220 I247	M1 R2 G3 P4 K6 H7 K9 L11 M18 K21 G24 F26 V28 R29 P32 G33 P34 K36 R38 R48 N56 Y57 T58 K61 H79 K80 F81 K105 R107 K126 R129 T130 N132 K133 G134 T145 R147 Q166 G185 A218 R220 I247

External links

PDB	RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum	9cai
PubMed	39209556
UniProt	Q9N3X2\|RS4_CAEEL Small ribosomal subunit protein eS4 (Gene Name=rps-4)

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