Structure of PDB 4v5g Chain AD

Receptor sequence

>4v5gAD (length=208) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]

GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRP
SDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRL
DNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEK
SRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ
LVIEFYSR

3D structure

PDB

4v5g The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.

Chain

Resolution

3.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AD	G2 I5 P7 V8 C9 R10 R13 R14 K22 R25 K30 R35 R36 P40 G41 Q42 H43 S52 L58 R59 K61 Q62 R65 R66 S71 E72 R73 Q74 V112 S113 R115 Q116 Q119 R122 H123 H125 R132 V133 D134 L135 S137 R141 L155 E156 L157 E205 S208 R209	G1 I4 P6 V7 C8 R9 R12 R13 K21 R24 K29 R34 R35 P39 G40 Q41 H42 S51 L57 R58 K60 Q61 R64 R65 S70 E71 R72 Q73 V111 S112 R114 Q115 Q118 R121 H122 H124 R131 V132 D133 L134 S136 R140 L154 E155 L156 E204 S207 R208
BS02	ZN	AD	C12 C26 C31	C11 C25 C30

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding
GO:0046872	metal ion binding

	Biological Process
GO:0006412	translation
GO:0042274	ribosomal small subunit biogenesis

	Cellular Component
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:4v5g, PDBe:4v5g, PDBj:4v5g
PDBsum	4v5g
PubMed	19833920
UniProt	P80373\|RS4_THET8 Small ribosomal subunit protein uS4 (Gene Name=rpsD)

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