Structure of PDB 8qrt Chain AAA

Receptor sequence

>8qrtAAA (length=270) Species: 89585 (Lemna aequinoctialis)

GSLEPDGLSYKESFIVRSYEVGVNKTATVETIANLLQEVGCNHAQSVGFS
TDGFATTTTMRLLRLIWVTARMHIEIYKYPAWGDVVEIETWCQEDGKIGT
RRDWIIKDYSTGVVIGRATSKWVMMNQDTRRLQRVNDEVREEYLIFCPRT
PRLAFPEEDSDSLKKIPKLEEPAQSSKLGLVPRRADLDMNQHVNNVTYIG
WVLESIPQEIIDTHELQTITLDYRRECQHDDIVDSLSSREGECQFLHFLK
LSGSGLEINRGRTQWRRLAK

3D structure

• PDB: 8qrt Discovery and Optimization of Spirocyclic Lactams that Inhibit Acyl-ACP Thioesterase.
• Chain: AAA
• Resolution: 2.0 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	WP2	AAA	Q71 H77 A78 F83 G87 W101 C126 T134 R136 W156 F180	Q37 H43 A44 F49 G53 W67 C92 T100 R102 W122 F146

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 30 17:45:32 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8qrt', asym_id = 'AAA', title = 'Discovery and Optimization of Spirocyclic Lactams that Inhibit Acyl-ACP Thioesterase.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8qrt', asym_id='AAA', title='Discovery and Optimization of Spirocyclic Lactams that Inhibit Acyl-ACP Thioesterase.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0006633,0016297,0016790', uniprot = '', pdbid = '8qrt', asym_id = 'AAA'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0006633,0016297,0016790', uniprot='', pdbid='8qrt', asym_id='AAA')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>