Structure of PDB 8p1x Chain AAA

Receptor sequence

>8p1xAAA (length=492) Species: 1282 (Staphylococcus epidermidis)

MKQTYMIVNELDVNKGGMTTAMLTRSKFFLDNEISGDIITFDFKANYKDI
LKELVQSKKMDKRTQMHNPFIYFKNISNLQHKKYNYTMTRNLSNLLKDSV
EIKENSRISRFFNIMSREYLAYKRETEQETIFDLFKNNLRYKRIYFYKGK
IVKTEVFNSDNNLIAEQFYDDNGYLYLYRQINPEKKSIGKTYLVCKEKQF
KNNVEFCSYFLDKLIPDINDNIIICDGPGSFPKILKTNHKNVKKFAVIHV
NHYKNFDDTGAVKKQEDYILRNANKINGVVMLTEAQKKDIIEKYKITNAY
VISNFINITDDYRDKNDNKVVGHISRLVPQKGLPYLIDVAKKVVEQDNSV
EFHLYGTGEEKSKIENLIQESNLTNNVKLLGYTTNAIEKIKDFRCVISTS
QFEGQGLSLIEAMLLKKPVVAFDVKYGPSDFVKDGKNGYLIENKDIKKMA
NKILKLLHDKELSKSLGKHGRDTIIDMYQPEKLMVKWKQLFN

3D structure

• PDB: 8p1x Invasive Staphylococcus epidermidis uses a unique processive wall teichoic acid glycosyltransferase to evade immune recognition.
• Chain: AAA
• Resolution: 2.03 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	PO4	AAA	N9 G227 P228 G229 S230	N9 G227 P228 G229 S230
BS02	PO4	AAA	N203 K233	N203 K233
BS03	UPG	AAA	G16 G17 H249 N304 I324 R326 K331 Y382 T383 E403 G404 Q405 L407 S408 E411	G16 G17 H249 N304 I324 R326 K331 Y382 T383 E403 G404 Q405 L407 S408 E411

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Feb 21 02:38:40 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8p1x', asym_id = 'AAA', title = 'Invasive Staphylococcus epidermidis uses a uniqu... glycosyltransferase to evade immune recognition.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8p1x', asym_id='AAA', title='Invasive Staphylococcus epidermidis uses a uniqu... glycosyltransferase to evade immune recognition.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0016757', uniprot = '', pdbid = '8p1x', asym_id = 'AAA'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016757', uniprot='', pdbid='8p1x', asym_id='AAA')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>