Structure of PDB 7ryd Chain AAA

Receptor sequence
>7rydAAA (length=129) Species: 9031 (Gallus gallus) [Search protein sequence]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
3D structure
PDB7ryd Probing ion-binding at a protein interface: Modulation of protein properties by ionic liquids.
ChainAAA
Resolution1.18 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.17: lysozyme.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NO3 AAA D66 C80 S81 D66 C80 S81
BS02 NO3 AAA S24 L25 G26 Q121 I124 S24 L25 G26 Q121 I124
BS03 NO3 AAA R5 F38 R5 F38
BS04 NO3 AAA R14 H15 D87 I88 R14 H15 D87 I88
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7ryd, PDBe:7ryd, PDBj:7ryd
PDBsum7ryd
PubMed37480654
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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