Structure of PDB 6yrv Chain AAA

Receptor sequence

>6yrvAAA (length=573) Species: 554065 (Chlorella variabilis)

SPVAGQKYDYILVGGGTAACVLANRLSADGSKRVLVLEAGPDNTSRDVKI
PAAITRLFRSPLDWNLFSELQEQLAERQIYMARGRLLGGSSATNATLYHR
GAAGDYDAWGVEGWSSEDVLSWFVQAETNADFGPGAYHGSGGPMRVENPR
YTNKQLHTAFFKAAEEVGLTPNSDFNDWSHDHAGYGTFQVMQDKGTRADM
YRQYLKPVLGRRNLQVLTGAAVTKVNIDQAAGKAQALGVEFSTDGPTGER
LSAELAPGGEVIMCAGAVHTPFLLKHSGVGPSAELKEFGIPVVSNLAGVG
QNLQDQPACLTAAPVKEKYDGIAISDHIYNEKGQIRKRAIASYLLGGRGG
LTSTGCDRGAFVRTAGQALPDLQVRFVPGMALDPDGVSTYVRFAKFQSQG
LKWPSGITMQLIACRPQSTGSVGLKSADPFAPPKLSPGYLTDKDGADLAT
LRKGIHWARDVARSSALSEYLDGELFPGSGVVSDDQIDEYIRRSIHSSNA
ITGTCKMGNAGDSSSVVDNQLRVHGVEGLRVVDASVVPKIPGGQTGAPVV
MIAERAAALLTGKATIGASAAAP

3D structure

• PDB: 6yrv Mechanism and dynamics of fatty acid photodecarboxylase.
• Chain: AAA
• Resolution: 1.94 Å

Enzymatic activity

• Enzyme Commision number: 4.1.1.106: fatty acid photodecarboxylase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	AAA	G90 G92 T93 A94 L113 E114 A115 F134 W140 A158 G165 S166 N170 A171 T172 L173 M267 V298 C340 A341 G342 H345 N575 A610 Q620 T621 G622	G14 G16 T17 A18 L37 E38 A39 F58 W64 A82 G89 S90 N94 A95 T96 L97 M191 V222 C264 A265 G266 H269 N499 A534 Q544 T545 G546
BS02	PJ8	AAA	V453 G455 M456 G462 T465 Y466 F469 T484 Q486	V377 G379 M380 G386 T389 Y390 F393 T408 Q410
BS03	CO2	AAA	R451 N575	R375 N499

Gene Ontology

Molecular Function

• GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
• GO:0050660 flavin adenine dinucleotide binding

External links

• PDB: RCSB:6yrv, PDBe:6yrv, PDBj:6yrv
• PDBsum: 6yrv
• PubMed: 33833098
• UniProt: A0A248QE08|FAP_CHLVA Fatty acid photodecarboxylase, chloroplastic (Gene Name=FAP)