Structure of PDB 7wfd Chain A6

Receptor sequence

>7wfdA6 (length=212) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]

SSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA
QAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLF
VAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDF
MMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAH
LADPGHCNVFSA

3D structure

PDB

7wfd Supramolecular assembly of chloroplast NADH dehydrogenase-like complex with photosystem I from Arabidopsis thaliana.

Chain

Resolution

3.25 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CHL	A6	L67 W68 F69 P70 F86 F88	L13 W14 F15 P16 F32 F34
BS02	CLA	A6	V155 A156	V101 A102
BS03	CLA	A6	V159 G162 W163 G166 R167	V105 G108 W109 G112 R113
BS04	CLA	A6	G84 D85 F86 F88 L93 G94 L100 F103 A104 E107 H110 R227 M230	G30 D31 F32 F34 L39 G40 L46 F49 A50 E53 H56 R173 M176
BS05	CLA	A6	F103 A106 H110	F49 A52 H56
BS06	CLA	A6	W113 L116 A117 G120 P124 F136 R144 Y146	W59 L62 A63 G66 P70 F82 R90 Y92
BS07	CHL	A6	Y146 L153 Q157 L160 M161	Y92 L99 Q103 L106 M107
BS08	CHL	A6	Y139 G142 S143 S150 Q157	Y85 G88 S89 S96 Q103
BS09	CHL	A6	I109 R112 W113 A164 R168 D171 V178 I180 G195 P197 F202	I55 R58 W59 A110 R114 D117 V124 I126 G141 P143 F148
BS10	CLA	A6	W102 Q105 A106 I109 H110 W113 M158 M161 G162 E165 R168 W169	W48 Q51 A52 I55 H56 W59 M104 M107 G108 E111 R114 W115
BS11	CLA	A6	R112 M115 Y196 P197 G198 F202 W207 G208 L218 R219 E222	R58 M61 Y142 P143 G144 F148 W153 G154 L164 R165 E168
BS12	CLA	A6	K221 K224 N225	K167 K170 N171
BS13	CLA	A6	G235 F238 Q239 T243 N250 V263	G181 F184 Q185 T189 N196 V209
BS14	CLA	A6	H254 L255 P258 N262	H200 L201 P204 N208

Gene Ontology

	Molecular Function
GO:0016168	chlorophyll binding
GO:0046872	metal ion binding

	Biological Process
GO:0009765	photosynthesis, light harvesting
GO:0009768	photosynthesis, light harvesting in photosystem I
GO:0015979	photosynthesis

	Cellular Component
GO:0009507	chloroplast
GO:0009522	photosystem I
GO:0009535	chloroplast thylakoid membrane
GO:0009579	thylakoid
GO:0016020	membrane

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:7wfd, PDBe:7wfd, PDBj:7wfd
PDBsum	7wfd
PubMed	35123031
UniProt	Q8LCQ4\|LHCA6_ARATH Photosystem I chlorophyll a/b-binding protein 6, chloroplastic (Gene Name=LHCA6)

[Back to BioLiP]