Structure of PDB 6lqp Chain A5

Receptor sequence
>6lqpA5 (length=514) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
DSPVLQSAYDPSGQYLCYVTVALDKQRVGVQPTQRATWNENFLYLEDSKL
KVTCLKWVNDTVAIILGMNNGEIWLYSVLANEVTYKFTTGNSYEIKDIDL
MGNQLWCIDSSDAFYQFDLLQFKLLQHFRINNCVQLNKLTIVPAGDSVAQ
LLVASHSISLIDIEEKKVVMTFPGHVSPVSTLQVITNEFFISGAEGDRFL
NVYDIHSGMTKCVLVAESDIKELSHSGQADSIAVTTEDGSLEIFVDPLVS
GNKSKKSSKKIQIVSKDGRKVPIYNAFINKDLLNVSWLQNATMPYFKNLQ
WREIPNEYTVEISLNWNNKNKSADRDLHGKDLASATNYVEGNARVTSGDN
FKHVTATTTGTVTVILSQALQSNDHSLLETVLNNRDERVIRDTIFRLKPA
LAVILLERLAERIARQTHRQGPLNVWVKWCLIIHGGYLVSIPNLMSTLSS
LHSTLKRRSDLLPRLLALDARLDCTINKFKTLNYEAGDIHSSEPVVEEDE
DDVEYNEELDDAGL
3D structure
PDB6lqp Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
ChainA5
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A5 N360 R362 R460 R490 Q491 H493 R494 N342 R344 R385 R415 Q416 H418 R419
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
GO:0045943 positive regulation of transcription by RNA polymerase I
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0032040 small-subunit processome
GO:0033553 rDNA heterochromatin
GO:0034455 t-UTP complex
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lqp, PDBe:6lqp, PDBj:6lqp
PDBsum6lqp
PubMed32943522
UniProtQ04177|UTP5_YEAST U3 small nucleolar RNA-associated protein 5 (Gene Name=UTP5)

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