Structure of PDB 4v8z Chain A5

Receptor sequence

>4v8zA5 (length=71) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

PPPPPPPPPPPPPPPPPPPAVLSYYKVDAEGKVTKLRRECSNPTCGAGVF
LANHKDRLYCGKCHSVYKVNA

3D structure

PDB

4v8z Molecular architecture of a eukaryotic translational initiation complex.

Chain

Resolution

6.6 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	A5	X90 X91 X94 X97 X100 X101 R118 F131 A133 N134 H135 R138 Y140 G142 K143 H145 S146 K149	X9 X10 X13 X16 X19 X20 R37 F50 A52 N53 H54 R57 Y59 G61 K62 H64 S65 K68
BS02	ZN	A5	C141 C144	C60 C63

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0008270	zinc ion binding
GO:0031386	protein tag activity
GO:0031625	ubiquitin protein ligase binding
GO:0046872	metal ion binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0002109	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S)
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0016567	protein ubiquitination
GO:0019941	modification-dependent protein catabolic process
GO:0042254	ribosome biogenesis
GO:1990145	maintenance of translational fidelity

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:0044391	ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v8z, PDBe:4v8z, PDBj:4v8z
PDBsum	4v8z
PubMed	24200810
UniProt	P05759\|RS31_YEAST Ubiquitin-ribosomal protein eS31 fusion protein (Gene Name=RPS31)