Structure of PDB 8ckb Chain A250

Receptor sequence

>8ckbA250 (length=333) Species: 2301731 (Bacteroides phage crAss001) [Search protein sequence]

MVISINQVRQLYVAKALKANTAALTTAGDIVPKADTAKTTLYFQSMSPAG
IVASDKINLKHVLYAKATPSEALAHKLVRYSVTLDADVSATPVAGQNYIL
RLAFRQYIGLSEEDQYFKYGEVIARSGMTASDFYKKMAISLAKNLENKTE
STPLVNIYLISAAAASTDVPVTSATKESDLTATDYNQIIIEETEQPWVLG
MMPQAFIPFTPQFLTITVDGEDRLWGVATVVTPTKTVPDGHLIADLEYFC
MGARGDIYRGMGYPNIIKTTYLVDPGAVYDVLDIHYFYTGSNESVQKSEK
TITLVAVDDGSHTAMNALIGAINTASGLTIATL

3D structure

PDB

8ckb Structural atlas of the most abundant human gut virus

Chain

A250

Resolution

4.39 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	A250	M1 V2 I3 S4 I5 N6 Q7 V8 R9 Q10 L11 Y12 V13 A14 K15 A16 L17 K18 A27 G28 D29 I30 S54 D245 C250 D283 H285 E299 T301 I302 T303 L304 V305 A306 L318	M1 V2 I3 S4 I5 N6 Q7 V8 R9 Q10 L11 Y12 V13 A14 K15 A16 L17 K18 A27 G28 D29 I30 S54 D245 C250 D283 H285 E299 T301 I302 T303 L304 V305 A306 L318

Gene Ontology

	Cellular Component
GO:0019028	viral capsid
GO:0098021	viral capsid, decoration

View graph for
Cellular Component

External links

PDB	RCSB:8ckb, PDBe:8ckb, PDBj:8ckb
PDBsum	8ckb
PubMed
UniProt	A0A385DVS7\|AUXCP_BPCA1 Auxiliary capsid protein (Gene Name=crAss001_36)

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