Structure of PDB 8ova Chain A2

Receptor sequence
>8ovaA2 (length=183) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence]
SAKAPKLFNKWSYENLQTTEIALNDYITRTPTYVPHSAGRWQKKRFRKAR
IPIVERLTNGLMFKGRGNGKKLQAVRLVRHTLEIIHLLTDQNPIQVVIDA
VSKGAPREDSTRVRRQAVDVSPMRRVNEAIYLMCKGAREAAFRNLKTLPE
CLADEIVNASKGSSNSYAIKKKDEVERVAKANR
3D structure
PDB8ova A single pseudouridine on rRNA regulates ribosome structure and function in the mammalian parasite Trypanosoma brucei.
ChainA2
Resolution2.47 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A2 H37 Q43 R46 K49 N60 F64 R67 N69 G70 K71 K72 Q74 R77 N134 Y138 R150 L152 L155 H36 Q42 R45 K48 N59 F63 R66 N68 G69 K70 K71 Q73 R76 N127 Y131 R143 L145 L148
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8ova, PDBe:8ova, PDBj:8ova
PDBsum8ova
PubMed37985661
UniProtQ385D9

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