Structure of PDB 9bbi Chain A
Receptor sequence
>9bbiA (length=1105) Species:
9606
(Homo sapiens) [
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MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLR
PVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDI
ITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNK
ELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREK
EFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAP
PIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAM
ETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA
SIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMG
FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISV
ASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN
GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVF
ACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLT
IGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQGTTALRP
SASTQALSSSVSSSKEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVS
CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG
AVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKG
DFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGA
ENAFNLFVCQKDSTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQTPTQGS
VLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFH
TERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQREATADDLIKVVEE
LTRIH
3D structure
PDB
9bbi
Co-crystal structure of human DDB1 bound to fragment UB028669
Chain
A
Resolution
1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number
?
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
A1ALB
A
I33 K35 Y42 L49 F323 F353
I33 K35 Y42 L49 F323 F353
Gene Ontology
Molecular Function
GO:0003677
DNA binding
GO:0003684
damaged DNA binding
GO:0005515
protein binding
GO:0030674
protein-macromolecule adaptor activity
GO:0044877
protein-containing complex binding
GO:0071987
WD40-repeat domain binding
GO:0097602
cullin family protein binding
GO:0160072
ubiquitin ligase complex scaffold activity
Biological Process
GO:0006281
DNA repair
GO:0006289
nucleotide-excision repair
GO:0006511
ubiquitin-dependent protein catabolic process
GO:0006915
apoptotic process
GO:0006974
DNA damage response
GO:0007056
spindle assembly involved in female meiosis
GO:0010498
proteasomal protein catabolic process
GO:0016055
Wnt signaling pathway
GO:0016567
protein ubiquitination
GO:0019076
viral release from host cell
GO:0034644
cellular response to UV
GO:0035234
ectopic germ cell programmed cell death
GO:0042752
regulation of circadian rhythm
GO:0043066
negative regulation of apoptotic process
GO:0043161
proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044725
epigenetic programming in the zygotic pronuclei
GO:0045070
positive regulation of viral genome replication
GO:0045722
positive regulation of gluconeogenesis
GO:0045732
positive regulation of protein catabolic process
GO:0046726
positive regulation by virus of viral protein levels in host cell
GO:0048511
rhythmic process
GO:0051093
negative regulation of developmental process
GO:0051702
biological process involved in interaction with symbiont
GO:0070914
UV-damage excision repair
GO:1901990
regulation of mitotic cell cycle phase transition
GO:2000242
negative regulation of reproductive process
Cellular Component
GO:0000781
chromosome, telomeric region
GO:0005615
extracellular space
GO:0005634
nucleus
GO:0005654
nucleoplasm
GO:0005730
nucleolus
GO:0005737
cytoplasm
GO:0031464
Cul4A-RING E3 ubiquitin ligase complex
GO:0031465
Cul4B-RING E3 ubiquitin ligase complex
GO:0032991
protein-containing complex
GO:0035861
site of double-strand break
GO:0070062
extracellular exosome
GO:0080008
Cul4-RING E3 ubiquitin ligase complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:9bbi
,
PDBe:9bbi
,
PDBj:9bbi
PDBsum
9bbi
PubMed
UniProt
Q16531
|DDB1_HUMAN DNA damage-binding protein 1 (Gene Name=DDB1)
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