Structure of PDB 8yo7 Chain A

Receptor sequence
>8yo7A (length=442) Species: 2681598 (Escherichia phage T4) [Search protein sequence]
MQLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDL
ARGNKDKFHKLASIAGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDG
QGNFGSRTVQKAAASRYIFARVSKNFYNVYKDTEYAPVHQDKEHIPPAFY
LPIIPTVLLNGVSGIATGYATYILPHSVSSVKKAVLQALQGKKVTKPKVE
FPEFRGEVVEIDGQYEIRGTYKFTSRTQMHITEIPYKYDRETYVSKILDP
LENKGFITWDDACGEHGFGFKVKFRKEYSLSDNEEERHAKIMKDFGLIER
RSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRIDNKIKETESAF
RLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYVDKLVGMNI
FHMTSDEAKKLAEEAKAKKEENEYWKTTDVVTEYTKDLEEIK
3D structure
PDB8yo7 structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA
ChainA
Resolution3.16 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A R116 Y117 I165 A166 G168 A170 Q214 R300 R301 S302 N304 R116 Y117 I165 A166 G168 A170 Q214 R300 R301 S302 N304
BS02 dna A R27 V39 Q40 Y73 H75 S79 A83 L86 S163 I165 R27 V39 Q40 Y73 H75 S79 A83 L86 S163 I165
External links
PDB RCSB:8yo7, PDBe:8yo7, PDBj:8yo7
PDBsum8yo7
PubMed
UniProtP07065|TOP5_BPT4 DNA topoisomerase medium subunit (Gene Name=52)

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