Structure of PDB 8yfr Chain A

Receptor sequence
>8yfrA (length=1384) Species: 460519 (Komagataella phaffii) [Search protein sequence]
SQFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREG
GLNDPKLGSIDRNFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKK
VCECICMNCGKLLLDETNPTMAQAIRIRDPKKRFNAVWQLCKTKMVCECG
NTQPVVRKDGMKLWGTWRKLLTPGEILNVFKHISPEDCFRLGFNEDYARP
EWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDILKANINVQKLEM
DGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKG
KEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPETVT
QYNIHRLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDIVLQYGWK
VERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD
FDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGV
RKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKPLWTGKQLLSIA
IPSGIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIH
TVMREKGPKICAELFGNIQKVVNYWLLHNGFSIGIGDAIADASTMKEITH
AISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSRTLNDARDSAGR
SAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGFAD
RSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKT
AETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQ
TIDTIPGSDKAFHKRYYVDLMDEKNSIKPDVIEYAADILGDVELQKELNS
EYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKASD
LTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQCLVRARLATRR
ILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAAQSIGEPATQMN
VTLGVPRLKEILNVAKNIKTPALTVYLDREIALDIEKAKVIQSSIEYTTL
KNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSQSPWLLRLELDRARMLDK
QLTMNQVADKISEVFSDDLFVMWSEDNADKLIIRCRVIEEDQMLKRIEAH
MLDLIALRGIPGISKVYMVKHKVSVPDESGEYKNEELWALETDGINLAEV
MAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNVIAFDGSYVNYR
HMALLVDVMTSRGYLMAITRTGALMRCSFEETVEILFEAGAAAELDDCRG
VSENVMLGQLAPMGTGAFDVMIDEKLLTSLPADY
3D structure
PDB8yfr Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex.
ChainA
Resolution3.4 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C67 C77 H80 C66 C76 H79
BS02 ZN A C107 C148 C168 C106 C147 C149
BS03 MG A D482 D484 D486 D450 D452 D454
External links