Structure of PDB 8yfq Chain A

Receptor sequence
>8yfqA (length=1398) Species: 460519 (Komagataella phaffii) [Search protein sequence]
SQFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREG
GLNDPKLGSIDRNFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKK
VCECICMNCGKLLLDETNPTMAQAIRIRDPKKRFNAVWQLCKTKMVCEAD
SRGGCGNTQPVVRKDGMKLWGTWKKQPERKLLTPGEILNVFKHISPEDCF
RLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDIL
KANINVQKLEMDGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGR
PVKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISI
AKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKR
AGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRL
NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPV
MGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKP
LWTGKQLLSIAIPSGIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKK
TVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNYWLLHNGFSIGIGDAI
ADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSR
TLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMV
EGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAG
REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGE
DGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSIKPDVIEYAADIL
GDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQ
IFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQ
CLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAA
QSIGEPATQMNVTLGVPRLKEILNVAKNIKTPALTVYLDREIALDIEKAK
VIQSSIEYTTLKNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSPWLLRLE
LDRARMLDKQLTMNQVADKISEVFSDDLFVMWSEDNADKLIIRCRVIRDE
EDQMLKRIEAHMLDLIALRGIPGISKVYMVKHKVSVPDESGEYKNEELWA
LETDGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNV
IAFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEET
VEILFEAGAAAELDDCRGVSENVMLGQLAPMGTGAFDVMIDEKLLTSL
3D structure
PDB8yfq Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex.
ChainA
Resolution3.3 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A R176 K1111 R163 K1077
BS02 dna A K318 K333 R345 Q448 A833 Y837 R1389 E1406 E1407 K297 K312 R324 Q427 A812 Y816 R1331 E1348 E1349
BS03 rna A R63 I251 A252 M253 R62 I230 A231 M232
BS04 ZN A C67 C70 C77 H80 C66 C69 C76 H79
BS05 ZN A C107 C148 C106 C147
BS06 MG A D482 D484 D486 D461 D463 D465
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