Structure of PDB 8y6h Chain A
Receptor sequence
>8y6hA (length=610) Species:
9606
(Homo sapiens) [
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PTVSVFSMFRYSNWLDKLYMVVGTLAAIIHGAGLPLMMLVFGEMTDIFAN
AGNLEDLMSNIFMNLEEDMTRYAYYYSGIGAGVLVAAYIQVSFWCLAAGR
QIHKIRKQFFHAIMRQLNTRLTDDVSKINEGIGDKIGMFFQSMATFFTGF
IVGFTRGWKLTLVILAISPVLGLSAAVWAKILSSFTDKELLAYAKAGAVA
EEVLAAIRTVIAFGGQKKELERYNKNLEEAKRIGIKKAITANISIGAAFL
LIYASYALAFWYGTTLVLSGEYSIGQVLTVFFSVLIGAFSVGQASPSIEA
FANARGAAYEIFKIIDNSFWRIMKLNLTEWPYFVVGVFCAIINGGLQPAF
AIIFSKIIGVFTRIDDPETKRQNSNLFSLLFLALGIISFITFFLQGFTFG
KAGEILTKRLRYMVFRSMLRQNTTGALTTRLANDAAQVKGAIGSRLAVIT
QNIANLGTGIIISFIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQKELEG
SGKIATEAEQKFEHMYAQSLQVPYRNSLRKAHIFGITFSFTQAMMYFSYA
GCFRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKIS
AAHIIMIIEK
3D structure
PDB
8y6h
Cryo-EM structure of P-glycoprotein bound to triple elacridar inhibitor molecules.
Chain
A
Resolution
2.49 Å
3D
structure
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Enzymatic activity
Enzyme Commision number
7.6.2.1
: P-type phospholipid transporter.
7.6.2.2
: ABC-type xenobiotic transporter.
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
R0Z
A
L65 M69 F336 Q725 F728 F732 E875 Q946 M949 Y950 Y953 F983
L34 M38 F282 Q347 F350 F354 E488 Q542 M545 Y546 Y549 F579
BS02
R0Z
A
W232 A233 L236 S237 I306 Y310 P350 M876 L879 S880 F994
W178 A179 L182 S183 I252 Y256 P296 M489 L492 S493 F590
BS03
R0Z
A
W232 L236 F239 F770 S831 Q838 V991 F994
W178 L182 F185 F392 S444 Q451 V587 F590
Gene Ontology
Molecular Function
GO:0005515
protein binding
GO:0005524
ATP binding
GO:0008559
ABC-type xenobiotic transporter activity
GO:0015562
efflux transmembrane transporter activity
GO:0016887
ATP hydrolysis activity
GO:0022857
transmembrane transporter activity
GO:0031625
ubiquitin protein ligase binding
GO:0042626
ATPase-coupled transmembrane transporter activity
GO:0042910
xenobiotic transmembrane transporter activity
GO:0046943
carboxylic acid transmembrane transporter activity
GO:0090554
phosphatidylcholine floppase activity
GO:0090555
phosphatidylethanolamine flippase activity
GO:0099038
ceramide floppase activity
GO:0140326
ATPase-coupled intramembrane lipid transporter activity
GO:0140328
floppase activity
GO:0140359
ABC-type transporter activity
Biological Process
GO:0000086
G2/M transition of mitotic cell cycle
GO:0006805
xenobiotic metabolic process
GO:0006869
lipid transport
GO:0008218
bioluminescence
GO:0009410
response to xenobiotic stimulus
GO:0045332
phospholipid translocation
GO:0046865
terpenoid transport
GO:0055085
transmembrane transport
GO:0070633
transepithelial transport
GO:0072089
stem cell proliferation
GO:0099040
ceramide translocation
GO:0140115
export across plasma membrane
GO:0150104
transport across blood-brain barrier
GO:1905039
carboxylic acid transmembrane transport
GO:1990961
xenobiotic detoxification by transmembrane export across the plasma membrane
GO:1990962
xenobiotic transport across blood-brain barrier
GO:2001225
regulation of chloride transport
Cellular Component
GO:0005737
cytoplasm
GO:0005886
plasma membrane
GO:0009986
cell surface
GO:0016020
membrane
GO:0016324
apical plasma membrane
GO:0070062
extracellular exosome
GO:0098591
external side of apical plasma membrane
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:8y6h
,
PDBe:8y6h
,
PDBj:8y6h
PDBsum
8y6h
PubMed
38579618
UniProt
P08183
|MDR1_HUMAN ATP-dependent translocase ABCB1 (Gene Name=ABCB1)
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