Structure of PDB 8xrx Chain A

Receptor sequence
>8xrxA (length=750) Species: 1710 (Cellulosimicrobium cellulans) [Search protein sequence]
TLPYLDPAVPVADRVEDLLARMTLPEKVGQMLQLDARDGVGPAVLEKHAG
SLLHTSPENVLAAHELTGRTRLRIPLLLAEDCIHGHSFWVGATIFPTQLG
MAATWDPALVEQVAHATAVEVAATGVHWTFSPVLCIARDLRWGRVDETFG
EDPFLIGELASAMVRGYQGDGLSDPTGILATAKHFAGYSETQGGRDASEA
DISQRKLRSWFLPPFERVAREGCATFMLGYQSMDGVPVTVNGWLLDDVLR
GEWGYTGTLVTDWDNVGRMVWEQHIQPDYVHASAAAVRAGNDMVMTTPRF
FEGALEAVDRGLVEEAAIDAAVRRILTLKFRLGLFEDPRRPDVARQQAVI
ASAEHAAVNLEVARRSLVLLTNDGTLPFAGGLDRAATPDGRALAPAGAPA
RTIAVVGPNADDDHTQLGDWAGASGQADWLPDGHPREMTTTVLDGFRALA
PEGWAVTHARGADILTLAPDPEQVVVPAAPDDALIAEAVAAARDADLAVA
VVGDRIELVGEGRSTATLELVGGQVALLDALVATGTPVVVVVVASKPLVL
PPSAHAAAAVVWAANPGMRGGQAVAELVLGLIEPEGRLPISFARHAGQQP
TYYNVVRGQHGVRYADLTQSPAFAFGEGLSYTTVEYADLRVLGTEHGPDD
VVRAEVTLTNTGSRPVRETVQVYVSDTVTSVTWAEKELKAYRKVDLAPGE
SATVGLEVPVADCTLVDAHGRRVVEPGEFELRVGPSSREDALLRASFTVA
3D structure
PDB8xrx A trapped covalent intermediate as a key catalytic element in the hydrolysis of a GH3 beta-glucosidase: An X-ray crystallographic and biochemical study.
ChainA
Resolution2.5 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC A H56 W265 E525 H54 W263 E511
BS02 BGC A D83 R146 K185 H186 Y232 D264 M297 W423 D81 R144 K183 H184 Y230 D262 M295 W420
BS03 CA A D690 V692 D676 V678
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Feb 18 11:46:05 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8xrx', asym_id = 'A', title = 'A trapped covalent intermediate as a key catalyt...An X-ray crystallographic and biochemical study. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8xrx', asym_id='A', title='A trapped covalent intermediate as a key catalyt...An X-ray crystallographic and biochemical study. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0004553,0005975', uniprot = '', pdbid = '8xrx', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005975', uniprot='', pdbid='8xrx', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>