Structure of PDB 8x38 Chain A

Receptor sequence

>8x38A (length=430) Species: 273507 (Phanerochaete chrysosporium RP-78)

SLYNGRKAPLRLHILIVGCGLGGLAAAYCLAQAGHRVTVVEAAHAIGEVG
AGIQVTPNVTRLLRRWGLADAIERVAVRPEAIVFRRYKTGERVGYTKWGD
KMEEYGAPYYHIHRADFHKLLFDLAAPNMTLRLKSTVVGVDPDAPSLTLA
SGEVLHGDVIIGADGVKSYVQQVVIGRANPAQPTGDAAYRAIIPTSVMLE
DPDLKPFVDTPEMTAWMGPGTHLMAYNIRAKQEFNMVLLHPDDGSVESWT
AEGSAEKMRADFKDYEPRVQKLLQHVKSTLKWRLMDRQPLEKWVHSSGRV
ALLGDSCHPMLPYRAQGAAMAIEDAAVLGNLFSRLSHPSQIAPLLHAYQN
LRLKRTADTQASSRLNQKIFHLPDGPAQEARDADMRAAMELEFRLLDRKK
NMAQFGYDADAVADRWWADVGEREIGSLGQ

3D structure

• PDB: 8x38 Decarboxylative Vanillate 1-Hydroxylase from Phanerochaete chrysosporium
• Chain: A
• Resolution: 2.0 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	A	V42 G43 G45 L46 G47 E66 A67 G75 A76 R139 V162 D189 G190 R215 W274 G329 D330 A343	V17 G18 G20 L21 G22 E41 A42 G50 A51 R114 V137 D164 G165 R190 W249 G304 D305 A318

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Thu Feb 20 05:23:23 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8x38', asym_id = 'A', title = 'Decarboxylative Vanillate 1-Hydroxylase from Phanerochaete chrysosporium'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8x38', asym_id='A', title='Decarboxylative Vanillate 1-Hydroxylase from Phanerochaete chrysosporium')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0071949', uniprot = '', pdbid = '8x38', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0071949', uniprot='', pdbid='8x38', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>