Structure of PDB 8wmy Chain A

Receptor sequence
>8wmyA (length=198) Species: 1279 (Staphylococcus) [Search protein sequence]
MTYEDYLPYSRTELLAKIAEQMSPKRFKHVLGVEKAALSLAECYGCNPDK
AGLAALLHDYAKECPDQVFLDLIDKYQLSPELAKWNNNVWHGMVGIYKIQ
EDLGLKDKDILRAIEIHTVGAAEMTLLDKVLYVADYIEEGRIFPLVDDAR
KIAKLDLNQAVAYETVNTVAYLASKAQPIFPQTLDTYNAFCSYLKEYL
3D structure
PDB8wmy Molecular Mechanism of Ap4A Hydrolysis by YqeK of Staphylococcus pyogenes.
ChainA
Resolution1.91 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.1.41: bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP A H29 H58 D59 K62 N88 H91 H117 T118 D135 L172 P178 F180 T183 H29 H58 D59 K62 N88 H91 H117 T118 D135 L172 P178 F180 T183
BS02 MG A D59 H91 H117 D59 H91 H117
BS03 MG A H29 H58 D59 D135 H29 H58 D59 D135
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8wmy, PDBe:8wmy, PDBj:8wmy
PDBsum8wmy
PubMed
UniProtA0A4U7IGH6

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