Structure of PDB 8wmj Chain A

Receptor sequence
>8wmjA (length=742) Species: 52970 (Rhodomonas salina) [Search protein sequence]
KKVSITVDRDPVATSFEKWAQPGHFSRTLAKGPKTTTWIWNLHADVHDFD
SHTNSLEDISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYSAWLSNPTA
VKPSAQVVWPIVGQEVLNGDVGGGFQGVQVTSGFFQIWRSSGITSEVELY
WCALAGLIMSGLMIFAGWFHYHKAAPKLEWFQNAESMLNHHLSGLLGLGC
LSWAGHQIHVSLPVNKLLDAGVAPQEIPLPHEFLVNRDLMAQLYPSFSKG
LVPFFTLNWSEYSDFLTFKGGLNPVTGGLWLSDTAHHHLALAVLFIVAGH
MYRTNWGIGHSMKEILEAHKGPFTGEGHKGLYEILTTSWHAQLAINLAML
GSVSIIVAHHMYAMPPYPYIATDYPTQLSIFTHHMWIGGFCVCGGAAHAG
IFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWICIFLGFHSFGLYIHND
TMRALGRTQDMFSDTAIQLKPVFAQWVQSIHTLAPGNTTPNALATASYAF
GGDVVAVGNKVAMMPISLGTADFMVHHIHAFTIHVTVLILLKGVLFSRNS
RLIPDKANLGFRFPCDGPGRGGTCQSSAWDSVFLGLFWMYNCISVVIFHF
SWKMQSDVWGTVQSDGTVTHITGGNFAQSAITINGWLRDFLWAQASQVIQ
SYGSALSAYGLIFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLNV
APAIQPRALSITQGRAVGLAHYLLGGIGTTWAFFLARIISVG
3D structure
PDB8wmj Growth phase-dependent reorganization of cryptophyte photosystem I antennae.
ChainA
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.97.1.12: photosystem I.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLA A I540 F543 Y602 V607 F610 W648 L653 A657 F675 H679 W682 Y734 G738 T741 T742 F745 I528 F531 Y590 V595 F598 W636 L641 A645 F663 H667 W670 Y722 G726 T729 T730 F733
BS02 CLA A F680 A683 F684 L686 M687 Y695 W696 F668 A671 F672 L674 M675 Y683 W684
BS03 CLA A W29 H34 F35 V56 H57 I83 W19 H24 F25 V46 H47 I73
BS04 CLA A H57 F59 I73 A76 H77 Q80 L81 I84 F85 W351 H352 Q354 L355 N358 L359 H47 F49 I63 A66 H67 Q70 L71 I74 F75 W339 H340 Q342 L343 N346 L347
BS05 CLA A H57 Q80 I83 I84 W87 L362 F402 H47 Q70 I73 I74 W77 L350 F390
BS06 CLA A L86 G90 F93 H94 F98 W119 L76 G80 F83 H84 F88 W109
BS07 CLA A M91 Q116 V140 T141 S142 Y671 I674 W743 M81 Q106 V130 T131 S132 Y659 I662 W731
BS08 CLA A Q116 V118 W119 V122 Q124 L673 Q106 V108 W109 V112 Q114 L661
BS09 CLA A I15 F74 F78 A176 F179 H180 W192 I5 F64 F68 A166 F169 H170 W180
BS10 CLA A T24 S25 F26 K28 W29 H34 K72 S75 I174 G177 W178 Y181 H182 T14 S15 F16 K18 W19 H24 K62 S65 I164 G167 W168 Y171 H172
BS11 CLA A I15 W192 S198 H202 W318 I5 W180 S186 H190 W306
BS12 CLA A F74 H77 F78 L81 M169 W192 N195 M199 H202 H203 L207 F64 H67 F68 L71 M159 W180 N183 M187 H190 H191 L195
BS13 CLA A G152 I153 E158 W161 C162 S214 W215 H218 H221 V222 P242 G142 I143 E148 W151 C152 S202 W203 H206 H209 V210 P230
BS14 CLA A G217 I220 H221 F259 G262 L263 F277 G205 I208 H209 F247 G250 L251 F265
BS15 CLA A W161 H243 W151 H231
BS16 CLA A W271 L278 H298 L301 A302 V305 N503 W259 L266 H286 L289 A290 V293 N491
BS17 CLA A F280 L291 D295 H298 H299 H372 M376 A508 F268 L279 D283 H286 H287 H360 M364 A496
BS18 CLA A L208 C212 W215 T296 H299 H300 L303 F307 I368 V369 H372 M373 P378 Y379 L196 C200 W203 T284 H287 H288 L291 F295 I356 V357 H360 M361 P366 Y367
BS19 CLA A N201 S205 L210 H312 T316 W318 I320 N189 S193 L198 H300 T304 W306 I308
BS20 CLA A L204 L208 A310 M313 Y314 L192 L196 A298 M301 Y302
BS21 CLA A V309 M313 G321 H322 V297 M301 G309 H310
BS22 CLA A H322 I327 A330 H331 H310 I315 A318 H319
BS23 CLA A L328 H331 H340 L343 L428 L316 H319 H328 L331 L416
BS24 CLA A F193 A196 M199 L200 H203 Y344 L347 T348 T349 S350 W351 Q354 I357 N358 M361 L362 F181 A184 M187 L188 H191 Y332 L335 T336 T337 S338 W339 Q342 I345 N346 M349 L350
BS25 CLA A I367 I368 H371 V404 I545 T548 V549 C604 I355 I356 H359 V392 I533 T536 V537 C592
BS26 CLA A V365 I368 H371 H372 A375 M376 F512 V353 I356 H359 H360 A363 M364 F500
BS27 CLA A W87 S142 S391 T394 H395 W398 I399 I739 W743 W77 S132 S379 T382 H383 W386 I387 I727 W731
BS28 CLA A W87 S142 F144 I147 L362 V365 V369 M373 Y379 H395 H396 I399 W77 S132 F134 I137 L350 V353 V357 M361 Y367 H383 H384 I387
BS29 CLA A H53 A54 V56 H57 D58 L355 L359 F402 G406 A409 H410 I413 R574 W591 L598 H43 A44 V46 H47 D48 L343 L347 F390 G394 A397 H398 I401 R562 W579 L586
BS30 CLA A F335 T336 R431 V432 H435 H442 F323 T324 R419 V420 H423 H430
BS31 CLA A W445 F449 F452 H453 W433 F437 F440 H441
BS32 CLA A F452 G456 L457 I459 H460 M464 R469 D472 F474 F440 G444 L445 I447 H448 M452 R457 D460 F462
BS33 CLA A V489 I492 H493 A496 T500 T501 V477 I480 H481 A484 T488 T489
BS34 CLA A H371 Y374 F485 A486 Q490 F512 I528 H538 H541 V608 H611 K615 H359 Y362 F473 A474 Q478 F500 I516 H526 H529 V596 H599 K603
BS35 CLA A L450 P483 V484 F485 A486 F535 H538 H539 A542 L438 P471 V472 F473 A474 F523 H526 H527 A530
BS36 CLA A I439 L443 I545 H546 V549 I427 L431 I533 H534 V537
BS37 CLA A W50 I681 F684 L721 V729 H733 W40 I669 F672 L709 V717 H721
BS38 CLA A H331 P334 F335 H319 P322 F323
BS39 CLA A L673 L676 H679 F680 W682 A683 L661 L664 H667 F668 W670 A671
BS40 CLA A F280 T500 T501 P502 N503 F268 T488 T489 P490 N491
BS41 CLA A H442 W445 H430 W433
BS42 CLA A T46 I49 W50 H707 P714 P718 T36 I39 W40 H695 P702 P706
BS43 CLA A I49 W50 L52 H53 I39 W40 L42 H43
BS44 PQN A W50 M687 F688 S691 R693 W696 A720 L721 G726 W40 M675 F676 S679 R681 W684 A708 L709 G714
BS45 WVN A F85 C162 L210 S214 F75 C152 L198 S202
BS46 WVN A L210 G211 L198 G199
BS47 WVN A I357 F414 I345 F402
BS48 WVN A A360 M361 S364 V404 G407 L552 A348 M349 S352 V392 G395 L540
BS49 WVN A L213 L263 F266 I308 H312 L201 L251 F254 I296 H300
BS50 CLA A F455 I459 D462 F543 W600 N603 I645 W682 Y734 F443 I447 D450 F531 W588 N591 I633 W670 Y722
BS51 CLA A I703 A706 H707 I691 A694 H695
BS52 CLA A W445 I448 W433 I436
BS53 CLA A R97 F98 R87 F88
BS54 SF4 A C577 G579 C586 I723 C565 G567 C574 I711
BS55 CLA A L649 L653 W654 L637 L641 W642
BS56 CLA A N444 C447 I448 F452 F543 V547 L550 F599 W600 N432 C435 I436 F440 F531 V535 L538 F587 W588
BS57 CLA A T463 A466 L467 T451 A454 L455
BS58 II0 A W119 I121 W109 I111
BS59 CLA A F267 L269 F255 L257
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0009055 electron transfer activity
GO:0016168 chlorophyll binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009507 chloroplast
GO:0009522 photosystem I
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8wmj, PDBe:8wmj, PDBj:8wmj
PDBsum8wmj
PubMed38734819
UniProtA6MVZ7

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