Structure of PDB 8wey Chain A

Receptor sequence
>8weyA (length=741) Species: 2771 (Cyanidium caldarium) [Search protein sequence]
KVKVVVDRDVVATSFEKWAKPGHFSRSLAKGPKTTTWIWNLHADAHDFDS
HTSSLEEVSRKIFSAHFGQLAIIFIWLSGMYFHGARFSNYVAWLSNPTGI
KPSAQVVWPIVGQQILNADVGGGIQGIQITSGLFQLWRASGIVNELQLYV
TAIGGLVMAGLMMFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSL
SWAGHQIHVSLPVNKLLDAGVAPSSIPLPHEFILNRNLMAELYPSFQQGL
APFFTLNWKQYSDILTFKGGLSPVTGGLWLTDVAHHHLAIAVLFIVAGHM
YRTNWGIGHSMKQLLEAHKGPLTGEGHKGLYEVLTTSWHANLAINLAMLG
SLSIIVAHHMYSMPPYPYLATDYPTQLSLFTHHMWIGGFCIVGAGAHAAI
YMVRDYSPTVNYNNVLDRMIRHRDAIISHLNWVCIFLGTHSFGLYIHNDT
MRALGRAQDMFSDTAIQLQPVLAQWIQQIHTLAPGNTAVNALATASYAFG
ADTVTVGSKIAMMPIKLGTADFMVHHIHAFTIHVTVLILLKGVLFARNSR
LIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNALSVVIFHFS
WKMQSDVWGTVSSNGTVSHITGGNFAQSAITINGWLRDFLWAQASQVIQS
YGSSLSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVA
PSIAPRALSITQGRAVGVAHYLLGGIATTWAFFLARIISVG
3D structure
PDB8wey Structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs
ChainA
Resolution1.92 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CL0 A Y452 I534 Y596 N597 S600 V601 F604 W642 L647 A651 F669 H673 W676 Y728 T735 T736 F739 Y445 I527 Y589 N590 S593 V594 F597 W635 L640 A644 F662 H666 W669 Y721 T728 T729 F732
BS02 CLA A H30 F31 H49 A52 H53 G75 I79 M170 H23 F24 H42 A45 H46 G68 I72 M163
BS03 CLA A H53 F55 I69 A72 H73 Q76 I80 F81 W345 H346 N348 L349 N352 L353 H46 F48 I62 A65 H66 Q69 I73 F74 W338 H339 N341 L342 N345 L346
BS04 CLA A H53 Q76 I80 W83 F396 H46 Q69 I73 W76 F389
BS05 CLA A G86 F89 H90 F94 W115 G79 F82 H83 F87 W108
BS06 CLA A W83 M87 Q112 I136 S138 Y665 W76 M80 Q105 I129 S131 Y658
BS07 CLA A I82 Q112 V114 W115 Q120 I75 Q105 V107 W108 Q113
BS08 CLA A V11 V13 R15 F70 F74 A172 F175 H176 W186 V4 V6 R8 F63 F67 A165 F168 H169 W179
BS09 CLA A V18 T20 S21 K24 W25 H30 K68 S71 M170 G173 W174 Y177 H178 V11 T13 S14 K17 W18 H23 K61 S64 M163 G166 W167 Y170 H171
BS10 CLA A V9 V11 W186 N189 S192 H196 V2 V4 W179 N182 S185 H189
BS11 CLA A H73 F74 W186 M193 H196 H197 H66 F67 W179 M186 H189 H190
BS12 CLA A S147 G148 I149 Q154 V157 T158 S208 W209 H212 H215 V216 P236 S140 G141 I142 Q147 V150 T151 S201 W202 H205 H208 V209 P229
BS13 CLA A S208 G211 I214 H215 F253 G256 L257 L295 S201 G204 I207 H208 F246 G249 L250 L288
BS14 CLA A L153 V157 H237 L241 L146 V150 H230 L234
BS15 CLA A W265 Y268 L272 H292 L295 A296 V299 N497 W258 Y261 L265 H285 L288 A289 V292 N490
BS16 CLA A F274 L285 D289 H292 H293 A296 I297 H366 M370 A502 F267 L278 D282 H285 H286 A289 I290 H359 M363 A495
BS17 CLA A G205 W209 Q213 V290 H293 H294 I297 F301 L359 M367 P372 Y373 G198 W202 Q206 V283 H286 H287 I290 F294 L352 M360 P365 Y366
BS18 CLA A N195 H196 A199 G200 L204 I302 H306 T310 W312 N188 H189 A192 G193 L197 I295 H299 T303 W305
BS19 CLA A L198 L300 A304 M307 Y308 M426 L191 L293 A297 M300 Y301 M419
BS20 CLA A V303 H306 M307 I314 G315 H316 V296 H299 M300 I307 G308 H309
BS21 CLA A H316 Q320 L321 H325 H309 Q313 L314 H318
BS22 CLA A L322 H325 H334 L337 V422 L423 L315 H318 H327 L330 V415 L416
BS23 CLA A V190 M193 L194 H197 M318 L341 T342 S344 W345 I351 N352 M355 V183 M186 L187 H190 M311 L334 T335 S337 W338 I344 N345 M348
BS24 CLA A I361 I362 H365 I398 I539 T542 V543 I354 I355 H358 I391 I532 T535 V536
BS25 CLA A I362 H366 S369 M370 S503 F506 I355 H359 S362 M363 S496 F499
BS26 CLA A W83 S138 S385 T388 H389 W392 M668 I733 W737 W76 S131 S378 T381 H382 W385 M661 I726 W730
BS27 CLA A W83 G139 L143 L356 L359 M367 Y373 L386 H389 H390 I393 W76 G132 L136 L349 L352 M360 Y366 L379 H382 H383 I386
BS28 CLA A H49 A50 H53 D54 L349 L353 F396 G400 A403 H404 I407 R411 F567 R568 W585 H42 A43 H46 D47 L342 L346 F389 G393 A396 H397 I400 R404 F560 R561 W578
BS29 CLA A L329 V422 R425 M426 H429 H436 L322 V415 R418 M419 H422 H429
BS30 CLA A H436 W439 H429 W432
BS31 CLA A W439 I442 F443 H447 W432 I435 F436 H440
BS32 CLA A T446 G450 I453 H454 T457 M458 R463 D466 F468 T439 G443 I446 H447 T450 M451 R456 D459 F461
BS33 CLA A W482 I486 H487 A490 T494 W475 I479 H480 A483 T487
BS34 CLA A F274 T494 V496 N497 F267 T487 V489 N490
BS35 CLA A H365 A480 I483 Q484 F506 I522 H532 H535 V602 H605 K609 H358 A473 I476 Q477 F499 I515 H525 H528 V595 H598 K602
BS36 CLA A L444 P477 V478 L479 A480 F529 H532 H533 L437 P470 V471 L472 A473 F522 H525 H526
BS37 CLA A L437 V440 I539 H540 L430 V433 I532 H533
BS38 CLA A W46 F678 L715 A722 V723 H727 L730 W39 F671 L708 A715 V716 H720 L723
BS39 CLA A S435 W439 I442 S428 W432 I435
BS40 PQN A M681 F682 S685 R687 W690 A714 L715 G720 M674 F675 S678 R680 W683 A707 L708 G713
BS41 SF4 A C571 G573 P574 C580 I717 C564 G566 P567 C573 I710
BS42 CLA A F674 A677 F678 M681 Y689 W690 L693 F667 A670 F671 M674 Y682 W683 L686
BS43 CLA A F449 I453 F537 W594 N597 I639 W676 Y728 F442 I446 F530 W587 N590 I632 W669 Y721
BS44 CLA A I697 A700 H701 V706 I690 A693 H694 V699
BS45 CLA A T42 I45 H701 V706 P708 P712 T35 I38 H694 V699 P701 P705
BS46 CLA A P28 I45 L48 H49 P21 I38 L41 H42
BS47 CLA A K326 P328 K319 P321
BS48 CLA A N438 G445 F537 L544 I545 F593 W594 N431 G438 F530 L537 I538 F586 W587
BS49 CLA A L667 L670 G671 H673 F674 W676 A677 L660 L663 G664 H666 F667 W669 A670
BS50 CLA A L643 L647 W648 L636 L640 W641
BS51 CLA A A460 L461 A453 L454
BS52 CLA A W699 L704 W692 L697
BS53 CLA A F261 L263 F254 L256
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 23 07:50:42 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8wey', asym_id = 'A', title = 'Structure of PSI-LHCI from Cyanidium caldarium p...to conservation and diversity of red-lineage LHCs'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8wey', asym_id='A', title='Structure of PSI-LHCI from Cyanidium caldarium p...to conservation and diversity of red-lineage LHCs')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009579,0015979,0016020,0046872', uniprot = '', pdbid = '8wey', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009579,0015979,0016020,0046872', uniprot='', pdbid='8wey', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>