Structure of PDB 8vdk Chain A

Receptor sequence
>8vdkA (length=432) Species: 359787 (Staphylococcus aureus subsp. aureus JH1) [Search protein sequence]
SKNVNDLITSNTTLTVVDADNSKTIVPAQDYLSLKSQITVDDKVKSGDYF
TIKYSDTVQVYGLNPEDIKNIGDIKDPNNGETIATAKHDTANNLITYTFT
DYVDRFNSVKMGINYSIYMDADTIPVDKKDVPFSVTIGNQITTTTADITY
PAYKEADNNSIGSAFTETVSHVGNVEDPGYYNQVVYVNPMDKDLKGAKLK
VEAYHPKYPTNIGQINQNVTNIKIYRVPEGYTLNKGYDVNTNDLVDVTDE
FKNKMTYGSNQSVNLDFGDITSAYVVMVNTKFQYTNSESPTLVQMATLSS
TGNKSVSTGNALGFTNQEVYKIGNYVWEDTNKNGVQELGEKGVGNVTVTV
FDNNTNTKVGEAVTKEDGSYLIPNLPNGDYRVEFSNLPKGYEVTPSKQGN
NEELDSNGLSSVITVNGKDNLSADLGIYKPKY
3D structure
PDB8vdk Crystal Structure of LPXTG-motif Cell Wall Anchor Domain Protein MSCRAMM_SdrD from Staphylococcus aureus
ChainA
Resolution1.8 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A D42 V44 V103 D42 V44 V103
BS02 CA A D336 N338 N340 V342 E344 E347 D329 N331 N333 V335 E337 E340
BS03 CA A E409 D412 N414 S429 E402 D405 N407 S422
BS04 CA A D18 D20 S22 T24 D30 D18 D20 S22 T24 D30
BS05 CA A N331 L428 D431 N324 L421 D424
External links
PDB RCSB:8vdk, PDBe:8vdk, PDBj:8vdk
PDBsum8vdk
PubMed
UniProtQ99W47|SDRD_STAAM Serine-aspartate repeat-containing protein D (Gene Name=sdrD)

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