Structure of PDB 8vdd Chain A

Receptor sequence

>8vddA (length=183) Species: 9606 (Homo sapiens) [Search protein sequence]

DIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYVDLERKETVWQLPLF
RRFRRFDPQFALTNIAVLKHNLNCVIKRSNSTAATNEVPEVTVFSKSPVT
LGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKI
SYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPE

3D structure

PDB

8vdd A structural basis of T cell cross-reactivity to a native and spliced self-antigens presented by HLA-DQ8

Chain

Resolution

2.6 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	A	Y9 R53 R54 F55 F59 N63 H69 N70 C73 R77	Y10 R54 R55 F56 F60 N64 H70 N71 C74 R78

External links

PDB	RCSB:8vdd, PDBe:8vdd, PDBj:8vdd
PDBsum	8vdd
PubMed	39074636
UniProt	Q30069

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