Structure of PDB 8u0u Chain A

Receptor sequence
>8u0uA (length=1126) Species: 666 (Vibrio cholerae) [Search protein sequence]
MNVSIEEFTHFDFQLVPEPSPLDLVITESLKNHIEVNGVKSGALLPLPFQ
TGIGKTYTALNFLLQQMLEQVRSELKEENTGKKSKRLLYYVTDSVDNVVS
AKADLLKLIEKQTVKGEPRFTLEQQEYLKAQIVHLPNQSEQLLQCSDAVL
NDVLIGFNLNAERDVQAEWSAISGLRRHASNPEVKISLNRQAGYFYRNLI
DRLQKKQKGADRVLLSGSLLASVETLLPGEKIRNGSAHVAFLTTSKFLKG
FHNTRSRYSPLRDLSGAVLIIDEIDKQNQVILSELCKQQAQDLIWAIRTL
RANFRDHQLESSPRYDKIEDLFEPLRERLEEFGTNWNLAFAFNTENERPV
RLFSDRSFTHVSSATHKLSLKSDFLRRKNLIFSDLTRFVNEADVIYQWFL
GTMRKAVFQYWENVRGLLEGTFQEAVQSLLTHFNLQEFESAVYESFDTSS
SKSYHHTGLKLVEVAHNQGTRDTVNCKASFLNTSPSGVLADMVDAGAVIL
GISATARADTVIHNFDFKYLNERLGNKLLSLSREQKQRVNNYYHSRRNYK
DNGVVLTVKYLNSRDAFLDALLEEYKPEARSSHFILNHYLGIAESEQAFV
RSWLSKLLASIKAFISSPDNRYMLSLLNRTLDTTRQNINDFIQFCCDKWA
KEFNVKTKTFFGVNADWMRLVGYDEISKHLNTELGKVVVFSTYASMGAGK
NPDYAVNLALEGESLISVADVQLRSDIDSIYLEKPTQLLLSDDYSHTANQ
LCQFHQILSLQENGELSPKSAENWCRQQLMGMSRERSLQQYHQTSDYQSA
VRKYIEQAVGRAGRTSLKRKQILLFVDSGLKEILAEESRDPSLFSHEYVA
LVNKAKSARAVRRLFNLAQRNNKDGMLSIKALVHRLHNQPASKSDIQEWQ
DIRTQLLRYPTVAFQPERFNRLYLQSMTKGYYRYQGNLDGDPNSFEFFDR
VPYGDMVSEEDCSLATLVQNQYVRPWFERKGFACSWQKEANVMTPIMFTN
IYKGALGEQAVEAVLTAFDFTFEEVPNSIYERFDNRVIFAGIEQPIWLDS
KSEGYSSKIALVEEEFGPSKFIYVNALGDTSKPIRYLNSCFVETSPQLAK
VIEIPALIDDTNRTAVQELIKWLHHS
3D structure
PDB8u0u Plasmid targeting and destruction by the DdmDE bacterial defence system.
ChainA
Resolution3.04 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A S94 V95 N137 Q138 Y194 R197 T243 S245 K246 K249 R257 F639 N668 R669 T670 A705 R709 S735 T780 Q781 E829 Q833 S94 V95 N137 Q138 Y194 R197 T243 S245 K246 K249 R257 F599 N628 R629 T630 A665 R669 S695 T736 Q737 E785 Q789
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