Structure of PDB 8sjd Chain A

Receptor sequence
>8sjdA (length=478) Species: 7370 (Musca domestica) [Search protein sequence]
RELKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVGAE
YGEHVNVEELLPSPITLSRKVTSDAKEKKALISREIKSAVEKDGASATID
LWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKA
IFSQFNVEDLSSIKFVTDRGANVVKSLANNIRINCSSHLLSNVLENSFEE
TPELNMPILACKNIVKYFKKANLQHRLRSSLKSECPTRWNSTYTMLRSIL
DNWESVIQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSP
SLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHY
TAFFFYPPALHMQQEKVAQIKEFCLSKMEDLELINPVCPSDEFEFYRKEI
VILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNI
ITEKRNRIGQQTVDSLLFLNSFYKNFCK
3D structure
PDB8sjd Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding.
ChainA
Resolution5.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A K585 R586 R588 I589 G590 K454 R455 R457 I458 G459
BS02 dna A L181 W182 T183 R218 S219 T220 A221 A251 N252 K255 R318 W319 L101 W102 T103 R138 S139 T140 A141 A171 N172 K175 R238 W239
BS03 dna A D248 R249 N272 D168 R169 N192
BS04 dna A P108 F109 S110 Q375 T376 P28 F29 S30 Q295 T296
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0046872 metal ion binding
GO:0046983 protein dimerization activity
Biological Process
GO:0006357 regulation of transcription by RNA polymerase II
Cellular Component
GO:0005634 nucleus

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Molecular Function
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Cellular Component
External links
PDB RCSB:8sjd, PDBe:8sjd, PDBj:8sjd
PDBsum8sjd
PubMed37491363
UniProtQ25438

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