Structure of PDB 8rfg Chain A

Receptor sequence
>8rfgA (length=2765) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence]
DHNDSIRASYMTIEELHDAGAALSRDGADSLPGFMEFDFFERHRENEKEI
LRVYRTTAVDAENGATITPAAEWLLDNHYVIEEAIQEVRRDFPRKFYRQL
PTMTVGGVTIPRVMALGWLYVAHTHSTVSRENMTALVDGYQTSQTLQIGE
LWALPSIIRFVLIENLRRISIRVERSRRMRQKANEVVDEIIRLNDAEASA
ALLKQVDSLVDDPTFATQFLYRLRNGSQTSGFAVAWLEERLHAAGTDAEN
VMMSEHNRLASGNVTMGNIVKSLREIDDTEWSVWFEEVSHIDKVLREETD
YEILDFGSRNTYRNTIELLARRSPRTEVEVARAAVEMARSDLPAGADENH
RVNVGSVLVGQRRFELEKALGYRPLASQHIVRSMRKFNWLAIAAPVLLIT
AVAMLAVGWFLAKAGMPWYVVTAFLLMFALPASEGATGLFNTLVTFFVKP
FRLVGYEFKNGIPEDARTLVAVPCMLTSRDSVDEMMRNIEVHYLANPHGE
IYFSLVSDWRDAPYEQSDEDLEILDYAKRELAALNSRYAFDGKTRFYLLH
RRRIYNSAEECWMGWERKRGKLHELNMLLRGDKDTTFLGGSNIVPADVKY
VMTLDADTRLMRDAVTKLVGKMHHPINRPKIDPVSGRVVEGYGLLQPRVT
PSLTTGKDASVFQRVFSINRGIDPYVFTVSDVYQDLTSEGTFTGKGLYDV
DAFEAALKGRIEENSILSHDLLEGSFARCALVTDVELVEDFPTRYEVEVS
RQHRWARGDWQLLPFIIDRARGVTAIGRWKMVDNLRRSLTPIAWFFASIL
GWYFMDPLGALIWQILLIFSLFVAPTLSLLSGLVPRSTDIVPQAHFFTIW
SEIRATNAQVALRIVFIADAACMMTDAIVRSLYRLLVSHKQGSIVDYYRQ
MWHAPVVAMLGLLFAALPGDNAFLIGIPFTLLWVLSPAVAWYVSQSAETE
DRLFVSEHVSFELRKIARRTWRYYEAFVTPQENHLPPDNFQETPEPIVAS
RTSPTNIGVYLLSVISARQFGWISFADTLERIENTIQTVEKMEKHRGHLY
NWYHTDTLQTLGPRYVSAVDSGNLAGHLIAVSSACRDWAEAPSAHLQGNL
DGIGDVAGILRETLKALPDNRKTLRPLHRRLEERIIGFSNALASVKREHE
FASIRVINLAVLARDIQKLATNVDHEVKSAQSAEVTRWAQLLVESCEAHI
SDSAIDLTNMEPLRQRLASLRDRSRNLAFSMDFTFLYRKDRRLLSIGYRV
ESKELDEACYDLLASECRLTSLFAIAKGDLPTEHWYRLGRQVVPIGAQGA
LVSWSGSMFEYLMPPLVMQERQGGILNQTNNLIVKEQMNHGRRLGTPWGI
SEAAFNARDHNMNYQYTNFGVPTLGLKRGLGQNAVIAPYASILASQYDPD
GALENLDKLRKLGALGQYGFHDAVDFTPTRVPDGKVCAVVYNYYAHHHGM
SIAAVANVAFDGVLRELFHSDPVIEAAELLLQEKAPREVPVMSAGKEQAD
LLRAEVRSIADPAVRDREVVFLSNGHYSTMLTSTGAGYSKWNGQAISRWK
ADPTDDRWGTFIFLRDTTNGQWWSATAEPRVIEGEKTKTIFTDDKAEFHK
TIGDLQSVVECIVATEHDAEGRRITLLNVGSEDRYIEVTSYMEPVIASED
DDNAHPLFSRMFVQTEIGRRGDVIRAWRNRRSQNEPGTVIAHLAADNAGP
SRPTEFETDRAKFIGRGRSLREAAAFDAGATLSSSDGFTLDPILSLRRTV
RVPAGKKVSVIFWTIAAPSREEVDKAIDRYRHPDAFAHELVHAWTRTQVQ
MRHVGVTSQQAAAFQHLGRYLTYPDMHLRADSETLKTGLASQRALWPLAI
SGDFPIFSLRINDDMDMDIAREALSAHEYLRSRGVIFDLVIVNERAASYA
QDMQHALDHISETQRRINPADGRPHVFSVRRDLMDEETWSALLAASRVVL
HVRNGKIVDQINRAVSLFAASDAAQARLPVPAFPVAEPVEDAGDLDFWNG
FGGFAKNGQEYVVRLNGGQSTPHPWINVISNENFGFHISAEGAGFSWSRN
SRDYQLTPWTNDPVINRPGEAFYVADVETGKLYTPCAALSRDPEAMFETR
HGLGYSILTGVADTLEVELTQTVDREKPVKFSQVIVRNKGSKSRRLKVYA
YVEWVLGNNGQKSAPFILSRHDAGSNAIFASNPYSIDYSARTSFLTLDSE
ASGFTTSRREFIGRFGSAQAPQGIVAGAALSGTTEVDGDPCAALMQEIHL
KPGEERHMTFILGDADNAEEAEALVKDVRQADFLSVLEESKKFWTGFTGQ
LQVSTPDAGFNHMVNNWLPYQALACRILARTAFYQSSGAFGFRDQLQDTL
AFPDLARTQILRAAGRQFPEGDVQHWWLPLTGAGVRTTISDDVVWLAYAI
NQYVSATGDAAILDESIPFLKGPALMPGQHDAFFQPETSERSATLYEHAA
LALDLAIHRTGENGLPLILGGDWNDGMNRVGVGGKGTSVWLGWFLAGALR
DFIEIAEKRGDTDRVGKWASHREKLRHVLETAGWDGSYYRRGYFDDGTPL
GSASSEECQIDSLGQSWSVLSGEGEEGRSRQAMDAVMEHLVDEKTGIIRL
FTPPFSRASHDPGYIKGYPPGVRENGGQYTHAATWVVLALAKQGRAQEAW
NCFKLLNPVNHALDAASSETYRVEPYVVTADVYGEGAYAGRGGWSWYTGS
AGWLYRAAVEGILGITRTDGKLHVSPSLPEDWSGFSIRITLDGKARDIAV
SRKAGTADVSVSVDG
3D structure
PDB8rfg Structure-function analysis of the cyclic beta-1,2-glucan synthase from Agrobacterium tumefaciens.
ChainA
Resolution3.35 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 BGC A Y694 R1324 Y675 R1290
BS02 BGC A R1321 G1323 R1287 G1289
BS03 BGC A W171 N329 W152 N310
BS04 BGC A D110 P112 D91 P93
BS05 BGC A F115 E336 F96 E317
BS06 BGC A R2101 W2429 L2431 R2052 W2376 L2378
BS07 BGC A S2386 A2388 S2337 A2339
BS08 BGC A H2428 D2528 H2375 D2475
BS09 BGC A N1565 Q1841 N1524 Q1800
BS10 BGC A H1394 H1844 H1360 H1803
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 30 17:05:43 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8rfg', asym_id = 'A', title = 'Structure-function analysis of the cyclic beta-1,2-glucan synthase from Agrobacterium tumefaciens.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8rfg', asym_id='A', title='Structure-function analysis of the cyclic beta-1,2-glucan synthase from Agrobacterium tumefaciens.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003824,0005975,0030246', uniprot = '', pdbid = '8rfg', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0005975,0030246', uniprot='', pdbid='8rfg', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>