Structure of PDB 8rf0 Chain A

Receptor sequence
>8rf0A (length=2780) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence]
DHNDSIRASYMTIEELHDAGAALSRDGADSLPGFMEFDFFERHRENEKEI
LRVYRTTAVDAENGATITPAAEWLLDNHYVIEEAIQEVRRDFPRKFYRQL
PTMTVGGVTIPRVMALGWLYVAHTHSTVSRENMTALVDGYQTSQTLQIGE
LWALPSIIRFVLIENLRRISIRVERSRRMRQKANEVVDEIIRLNDAEASA
ALLKQVDSLVDDPTFATQFLYRLRNGSQTSGFAVAWLEERLHAAGTDAEN
VMMSEHNRLASGNVTMGNIVKSLREIDDTEWSVWFEEVSHIDKVLREETD
YEILDFGSRNTYRNTIELLARRSPRTEVEVARAAVEMARSDLPAGADENH
RVNVGSVLVGQRRFELEKALGYRPLASQHIVRSMRKFNWLAIAAPVLLIT
AVAMLAVGWFLAKAGMPWYVVTAFLLMFALPASEGATGLFNTLVTFFVKP
FRLVGYEFKNGIPEDARTLVAVPCMLTSRDSVDEMMRNIEVHYLANPHGE
IYFSLVSDWRDAPYEQSDEDLEILDYAKRELAALNSRYAFDGKTRFYLLH
RRRIYNSAEECWMGWERKRGKLHELNMLLRGDKDTTFLGGSNIVPADVKY
VMTLDADTRLMRDAVTKLVGKMHHPINRPKIDPVSGRVVEGYGLLQPRVT
PSLTTGKDASVFQRVFSINRGIDPYVFTVSDVYQDLTSEGTFTGKGLYDV
DAFEAALKGRIEENSILSHDLLEGSFARCALVTDVELVEDFPTRYEVEVS
RQHRWARGDWQLLPFIIDRARGVTAIGRWKMVDNLRRSLTPIAWFFASIL
GWYFMDPLGALIWQILLIFSLFVAPTLSLLSGLVPRSTDIVPQAHFFTIW
SEIRATNAQVALRIVFIADAACMMTDAIVRSLYRLLVSHKLMLEWRTAAS
MQSSAQGSIVDYYRQMWHAPVVAMLGLLFAALPGDNAFLIGIPFTLLWVL
SPAVAWYVSQSAETEDRLFVSEHVSFELRKIARRTWRYYEAFVTPQENHL
PPDNFQETPEPIVASRTSPTNIGVYLLSVISARQFGWISFADTLERIENT
IQTVEKMEKHRGHLYNWYHTDTLQTLGPRYVSAVDSGNLAGHLIAVSSAC
RDWAEAPSAHLQGNLDGIGDVAGILRETLKALPDNRKTLRPLHRRLEERI
IGFSNALASVKREHEFASIRVINLAVLARDIQKLATNVDHEVKSAQSAEV
TRWAQLLVESCEAHISDSAIDLTNMEPLRQRLASLRDRSRNLAFSMDFTF
LYRKDRRLLSIGYRVESKELDEACYDLLASECRLTSLFAIAKGDLPTEHW
YRLGRQVVPIGAQGALVSWSGSMFEYLMPPLVMQERQGGILNQTNNLIVK
EQMNHGRRLGTPWGISEAAFNARDHNMNYQYTNFGVPTLGLKRGLGQNAV
IAPYASILASQYDPDGALENLDKLRKLGALGQYGFHDAVDFTPTRVPDGK
VCAVVYNYYAHHHGMSIAAVANVAFDGVLRELFHSDPVIEAAELLLQEKA
PREVPVMSAGKEQADLLRAEVRSIADPAVRDREVVFLSNGHYSTMLTSTG
AGYSKWNGQAISRWKADPTDDRWGTFIFLRDTTNGQWWSATAEPRVIEGE
KTKTIFTDDKAEFHKTIGDLQSVVECIVATEHDAEGRRITLLNVGSEDRY
IEVTSYMEPVIASEDDDNAHPLFSRMFVQTEIGRRGDVIRAWRNRRSQNE
PGTVIAHLAADNAGPSRPTEFETDRAKFIGRGRSLREAAAFDAGATLSSS
DGFTLDPILSLRRTVRVPAGKKVSVIFWTIAAPSREEVDKAIDRYRHPDA
FAHELVHAWTRTQVQMRHVGVTSQQAAAFQHLGRYLTYPDMHLRADSETL
KTGLASQRALWPLAISGDFPIFSLRINDDMDMDIAREALSAHEYLRSRGV
IFDLVIVNERAASYAQDMQHALDHISETQRRINPADGRPHVFSVRRDLMD
EETWSALLAASRVVLHVRNGKIVDQINRAVSLFAASDAAQARLPVPAFPV
AEPVEDAGDLDFWNGFGGFAKNGQEYVVRLNGGQSTPHPWINVISNENFG
FHISAEGAGFSWSRNSRDYQLTPWTNDPVINRPGEAFYVADVETGKLYTP
CAALSRDPEAMFETRHGLGYSILTGVADTLEVELTQTVDREKPVKFSQVI
VRNKGSKSRRLKVYAYVEWVLGNNGQKSAPFILSRHDAGSNAIFASNPYS
IDYSARTSFLTLDSEASGFTTSRREFIGRFGSAQAPQGIVAGAALSGTTE
VDGDPCAALMQEIHLKPGEERHMTFILGDADNAEEAEALVKDVRQADFLS
VLEESKKFWTGFTGQLQVSTPDAGFNHMVNNWLPYQALACRILARTAFYQ
SSGAFGFRDQLQDTLAFPDLARTQILRAAGRQFPEGDVQHWWLPLTGAGV
RTTISDDVVWLAYAINQYVSATGDAAILDESIPFLKGPALMPGQHDAFFQ
PETSERSATLYEHAALALDLAIHRTGENGLPLILGGDWNDGMNRVGVGGK
GTSVWLGWFLAGALRDFIEIAEKRGDTDRVGKWASHREKLRHVLETAGWD
GSYYRRGYFDDGTPLGSASSEECQIDSLGQSWSVLSGEGEEGRSRQAMDA
VMEHLVDEKTGIIRLFTPPFSRASHDPGYIKGYPPGVRENGGQYTHAATW
VVLALAKQGRAQEAWNCFKLLNPVNHALDAASSETYRVEPYVVTADVYGE
GAYAGRGGWSWYTGSAGWLYRAAVEGILGITRTDGKLHVSPSLPEDWSGF
SIRITLDGKARDIAVSRKAGTADVSVSVDG
3D structure
PDB8rf0 Structure-function analysis of the cyclic beta-1,2-glucan synthase from Agrobacterium tumefaciens.
ChainA
Resolution3.4 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 BGC A Y694 R1324 Y675 R1305
BS02 BGC A W171 S175 W152 S156
BS03 BGC A R1035 N1397 R1016 N1378
BS04 BGC A Y1294 W1338 Y1275 W1319
BS05 UPG A K587 K590 D624 K568 K571 D605
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 30 17:04:42 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8rf0', asym_id = 'A', title = 'Structure-function analysis of the cyclic beta-1,2-glucan synthase from Agrobacterium tumefaciens.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8rf0', asym_id='A', title='Structure-function analysis of the cyclic beta-1,2-glucan synthase from Agrobacterium tumefaciens.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003824,0005975,0030246', uniprot = '', pdbid = '8rf0', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0005975,0030246', uniprot='', pdbid='8rf0', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>