Structure of PDB 8r3z Chain A

Receptor sequence
>8r3zA (length=755) Species: 3049170 (Candidatus Harpocratesius repetitus) [Search protein sequence]
IDLEMNLFPVKISNLKISIYSWLIFPKIDNYKVQRNILEIALSEEALYEY
IIQKNKIYQKKRHPNIKRVVLFQFQIEINHLETVYLLDNPTLQNEIFGSI
CQTVGFEQIGHNYYYSAERQSSQLTQSTKESLKRIFPAIEIDGGKYYLKQ
GLTTAIHSTKKNFSKNAISNVVELEQTSKLIQKKNLLEIIMDLNRKVKDH
HKIENLLIGSRFITHYNNRIYTIHGIAWNKDPTSTFQITFEEYYKKNYQL
KISDLHQPLIIYYPILYFLPEFCHLFGLSNLDADNFRIRQEITRNTQMSP
SDRYRKLKTFVENQDILEFFKVWGLDIDSRMISMSGIKLPSLEIQTQTGV
FPINFEQSNWLSLLNRSQVIDAPELKKWMILYPKKSMSLQEARKFSNDFQ
KIAQQMGMVCRPPQLQGVFDMTKFLAILKKNPSQHHINSIQLILTITPNR
NKTCYRKIKQLCYRDLGIANQNVVLKNLRDQKRRMPIIRNLVRQIICKVP
NFNTKYGGALWKIKNNSIPDKTLIVGIDVWHGKSIAGIVFSTDKGLHYTA
NYTITPRKGLEFIHNLGKIIITQLQNHYNATRQYFENILIFRDGVGNTQY
NKILQEEFKSIQQELTNSSIFSEKHPKIAIILVNKRINRRLFHKNKQGQI
LNPKPGTFIEDQYIKSEFSNYYLVPHFSRFGTTRPIHISVIYNNTKYVNF
QFVEIANILCHLNYNWAGTVRIPASVEYAHKVADFIGSNQITSIAPELLQ
TQFYL
3D structure
PDB8r3z RNA-guided RNA silencing by an Asgard archaeal Argonaute.
ChainA
Resolution3.4 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna A Q354 R507 K509 Y512 K516 Q528 N529 V530 V531 N534 R540 I544 N547 Q551 H738 T745 N777 W778 K793 Q297 R450 K452 Y455 K459 Q471 N472 V473 V474 N477 R483 I487 N490 Q494 H676 T683 N715 W716 K731
BS02 MG A Q551 L817 Q494 L755
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