Structure of PDB 8qm0 Chain A

Receptor sequence
>8qm0A (length=627) Species: 1313 (Streptococcus pneumoniae) [Search protein sequence]
APKAYGYVYTADPETLDYLISSKNSTTVVTSNGIDGLFTNDNYGNLAPAV
AEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKK
SEAMYLAENSVKGLADYLSGTSTDFSTVGVKAVDDYTLQYTLNQPEPFWN
SKLTYSIFWPLNEEFETSKGSDFAKPTDPTSLLYNGPFLLKGLTAKSSVE
FVKNEQYWDKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSS
NYSKVAEEYKDNIYYTQSGSGIAGLGVNIDRQSYNYTSKTTDSEKVATKK
ALLNKDFRQALNFALDRSAYSAQINGKDGAALAVRNLFVKPDFVSAGEKT
FGDLVAAQLPAYGDEWKGVNLADGQDGLFNADKAKAEFAKAKKALEADGV
QFPIHLDVPVDQASKNYISRIQSFKQSVETVLGVENVVVDIQQMTSDEFL
NITYYAANASSEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTKTYLGF
DNPNSPSVVQVGLKEYDKLVDEAARETSDLNVRYEKYAAAQAWLTDSSLF
IPAMASSGAAPVLSRIVPFTGASAQTGSKGSDVYFKYLKSQDKVVTKEEY
EKAREKWLKEKAESNEKAQKELASHVK
3D structure
PDB8qm0 Crystal structure of the pneumococcal Substrate-binding protein AmiA in complex with Peptide 5
ChainA
Resolution1.76 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Y39 T42 S54 K55 N56 Y255 R276 Y278 A305 I356 S446 R452 F481 Y486 G500 G501 V502 S503 W504 G505 D507 E524 M586 G590 D614 Y7 T10 S22 K23 N24 Y223 R244 Y246 A273 I324 S414 R420 F449 Y454 G468 G469 V470 S471 W472 G473 D475 E492 M554 G558 D582
External links
PDB RCSB:8qm0, PDBe:8qm0, PDBj:8qm0
PDBsum8qm0
PubMed38838057
UniProtP18791|AMIA_STRPN Oligopeptide-binding protein AmiA (Gene Name=amiA)

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