Structure of PDB 8qlm Chain A

Receptor sequence
>8qlmA (length=621) Species: 1313 (Streptococcus pneumoniae) [Search protein sequence]
SKTYNYVYSSDPSSLNYLAENRAATSDIVANLVDGLLENDQYGNIIPSLA
EDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKS
EALYLVQDSVAGLDDYITGKTSDFSTVGVKALDDQTVQYTLVKPELYWNS
KTLATILFPVNADFLKSKGDDFGKADPSSILYNGPFLMKALVSKSAIEYK
KNPNYWDAKNVFVDDVKLTYYDGSDQESLERNFTAGAYTTARLFPNSSSY
EGIKEKYKNNIIYSMQNSTSYFFNFNLDRKSYNYTSKTSDIEKKSTQEAV
LNKNFRQAINFAFDRTSYGAQSEGKEGATKILRNLVVPPNFVSIKGKDFG
EVVASKMVNYGKEWQGINFADGQDPYYNPEKAKAKFAEAKKELEAKGVQF
PIHLDKTVEVTDKVGIQGVSSIKQSIESVLGSDNVVIDIQQLTSDEFDSS
GYFAQTAAQKDYDLYHGGWGPDYQDPSTYLDIFNTNSGGFLQNLGLEPGE
ANDKAKAVGLDVYTQMLEEANKEQDPAKRYEKYADIQAWLIDSSLVLPSV
SRGGTPSLRRTVPFAAAYGLTGTKGVESYKYLKVQDKIVTTDEYAKAREK
WLKEKEESNKKAQEELAKHVK
3D structure
PDB8qlm Crystal structure of the pneumococcal Substrate-binding protein AliB in complex with Peptide 3
ChainA
Resolution1.66 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A S40 N52 A54 Y252 D253 Y302 Y349 E440 D443 G446 V450 Y483 H497 G499 W500 G501 D503 S9 N21 A23 Y221 D222 Y271 Y318 E409 D412 G415 V419 Y452 H466 G468 W469 G470 D472
Gene Ontology
Molecular Function
GO:1904680 peptide transmembrane transporter activity
Biological Process
GO:0015031 protein transport
GO:0015833 peptide transport
Cellular Component
GO:0005886 plasma membrane
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8qlm, PDBe:8qlm, PDBj:8qlm
PDBsum8qlm
PubMed38838057
UniProtP0A4G1|ALIB_STRR6 Oligopeptide-binding protein AliB (Gene Name=aliB)

[Back to BioLiP]