Structure of PDB 8pds Chain A

Receptor sequence
>8pdsA (length=365) Species: 694067 (Human metapneumovirus CAN97-83) [Search protein sequence]
MSLQGIHLSDLSYKHAILKESQYTIKRDVGTTTAVTPSSLQQEITLLCGE
ILYAKHADYKYAAEIGIQYISTALGSERVQQILRNSGSEVQVVLTRTYSL
GKIKNNKGEDLQMLDIHGVEKSWVEEIDKEARKTMATLLKESSGNIPQNQ
RPSAPDTPIILLCVGALIFTKLASTIEVGLETTVRRANRVLSDALKRYPR
MDIPKIARSFYDLFEQKVYHRSLFIEYGKALGSSSTGSKAESLFVNIFMQ
AYGAGQTMLRWGVIARSSNNIMLGHVSVQAELKQVTEVYDLVREMGPESG
LLHLRQSPKAGLLSLANCPNFASVVLGNASGLGIIGMYRGRVPNTELFSA
AESYAKSLKESNKIN
3D structure
PDB8pds Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus.
ChainA
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A K171 A173 S174 R185 R186 R189 G255 T257 W261 S314 M337 Y338 R339 K171 A173 S174 R185 R186 R189 G255 T257 W261 S314 M337 Y338 R339
BS02 peptide A Y53 I103 K104 K129 R132 M135 R151 S153 Y53 I103 K104 K129 R132 M135 R151 S153
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:8pds, PDBe:8pds, PDBj:8pds
PDBsum8pds
PubMed37993464
UniProtQ6WBA1|NCAP_HMPVC Nucleoprotein (Gene Name=N)

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