Structure of PDB 8oyb Chain A

Receptor sequence

>8oybA (length=459) Species: 192952 (Methanosarcina mazei Go1) [Search protein sequence]

IMNPKRIRALKSGKQGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPV
VVVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKI
SRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGISIPFFEVDAHNVVPCWE
ASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPETLSDVLETGVKA
LLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGALRNDPT
KNMLSNLSPYLHFGQISSQRVVLEVEKAESNPGSKKAFLDEILIWKEISD
NFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLW
NASQMELLSTGKMHGYMRMYWAKKILEWSESPEKALEIAICLNDRYELDG
RDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKLYIEK
YSALDKLAA

3D structure

PDB

8oyb Time-resolved crystallography captures light-driven DNA repair

Chain

Resolution

2.25 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

4.1.99.3: deoxyribodipyrimidine photo-lyase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	A	A160 H161 R164 R256 E301 W305 R429 W431 R441 Y442 M443 S444 R450 K451	A159 H160 R163 R246 E291 W295 R419 W421 R431 Y432 M433 S434 R440 K441
BS02	dna	A	Y158 W328 R429 A430 W431 G432 E433 K439 R450 F452	Y157 W318 R419 A420 W421 G422 E423 K429 R440 F442
BS03	FDA	A	Y252 L264 S265 N266 S268 E301 K372 R378 N403 D409 N414 G415	Y242 L254 S255 N256 S258 E291 K362 R368 N393 D399 N404 G405

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0003677	DNA binding
GO:0003904	deoxyribodipyrimidine photo-lyase activity
GO:0016829	lyase activity

	Biological Process
GO:0000719	photoreactive repair
GO:0006281	DNA repair

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:8oyb, PDBe:8oyb, PDBj:8oyb
PDBsum	8oyb
PubMed	38033070
UniProt	Q8PYK9

[Back to BioLiP]