Structure of PDB 8ki8 Chain A

Receptor sequence
>8ki8A (length=1621) Species: 3052585 (Orthotospovirus tomatomaculae) [Search protein sequence]
VFFSHWTSKYKERNPTEIAYSEDIERIIDSLVTDEITKEEIIHFLFGNFC
FHIETMNDQHIADKFKGYQSSCINLKIEPKVDLADLKDHLIQKQQIWESL
YGKHLEKIMLRIREKKKKEKEIPDITTAFNQNAAEYEEKYPNCFTNDLSE
TKTNFSMTWSPSFEKINNAIINKFRESFKSSSRVIYNSPYSTNKARDITN
LVRLCLTELSCLTRNKNEFCMKETGRENKTIYFKGLAVMNIHMKKLIRHD
NEDSLSWCERIKDSLFVLHNGDIREEGKITSVYNNYAKNPECLYIQDSVL
KTELETCKKINKLCNDLAIYHYSEDMMQFSKGLMVADRYMTKESFKILTT
ANTSMMLLAFKSGVPYIALHIVDEDMSDQFNICYTKEIYSYFRNGSNYIY
IMRPQRLNQVRLLSLFKTPSKVPVCFAQFSKKANEMEKWLKNKDIEKVNV
FSMTMTVKQILINIVFSSVMIGTVTKLSRMGIFDFMRYAGFLPLSDYSNI
KEYIRDKFDPDITNVADIYFVNGIKKLLFRMEDLDIIGGITDLNIKCPIT
GSTLLTLEDLYNNVYLAIYMMPKSLHNHVHNLTSLLNVPAEWELKFRKEL
GFNIFEDIYPKKAMFDDKDLFSINGALNVKALSDYYLGNIENVGLMRSEI
ENKEDFLSPCYKISTLKSSKKCSQSNIISTDEIIECLQNAKIQDIENWKG
NNLAIIKGLIRTYNEEKNRLVEFFEDNCVNSLYLVEKLKEIINSGSITVG
KSVTSKFIRNNHPLTVETYLKTKLYYRNNVTVLKSKKVSEELYDLVKQFH
NMMEIDLDSVMNLGKGTEGKKHTFLQMLEFVMSKAKNVTGSVDFLVSVFE
KMQRTKTDREIYLMSMKVKMMLYFIEHTFKHVAQSDPSEAISISGDNKIR
ALSTLSLDTITSYNDILNKNSKKSRLAFLSADQSKWSASDLTYKYVLAII
LNPILTTGEASLMIECILMYVKLKKVCIPTDIFLNLRKAQGTFGQNETAI
GLLTKGLTTNTYPVSMNWLQGNLNYLSSVYHSCAMKAYHKTLECYKDCDF
QTRWIVHSDDNATSLIASGEVDKMLTDFSSSSLPEMLFRSIEAHFKSFCI
TLNPKKSYASSSEVEFISERIVNGAIIPLYCRHLANCCTESSHISYFDDL
MSLSIHVTMLLRKGCPNEVIPFAYGAVQVQALSIYSMLPGEVNDSIRIFK
KLGVSLKSNEIPTNMGGWLTSPIEPLSILGPSSNDQIIYYNVIRDFLNKK
SLEEVKDSVSSSSYLQMRFRELKGKYEKGTLEEKDKKMIFLINLFEKASV
SEDSDVLTIGMKFQTMLTQIIKLPNFINENALNKMSSYKDFSKLYPNLKK
NIASSLEMESVHDIMIKNPETILIAPLNDRDFLLSQLFMYTSPSKRNQLS
NQSTEKLALDRVLRSKARTKMTYEENMEKKILEMLKFDLDSYCSFKTCVN
LVIKDVNFSMLIPILDSAYPCESRKRDNYNFRWFQTEKWIPVVEGSPGLV
VMHAVYGSNYIENLGLKNIPLTDDSINVLTSTFGTGLIMEDVKSLVKGKD
SFETEAFSNSNECQRLVKACNYMIAAQNRLLAINTCFTRKSFPFYSKFNL
GRGFISNTLALLSTIYSKEES
3D structure
PDB8ki8 structure of Tomato spotted wilt virus L protein
ChainA
Resolution3.2 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A M472 M605 N606 K656 S782 P824 Q825 R826 R831 K896 L897 H1015 F1428 E1432 T1433 M157 M239 N240 K244 S362 P404 Q405 R406 R411 K476 L477 H580 F993 E997 T998
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