Structure of PDB 8kcc Chain A

Receptor sequence
>8kccA (length=102) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
VSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLE
LAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSV
LL
3D structure
PDB8kcc Mechanism of heterochromatin remodeling revealed by the DDM1 bound nucleosome structures.
ChainA
Resolution3.1 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A S25 K26 R38 R41 R51 R86 S2 K3 R15 R18 R28 R63
BS02 dna A K44 R51 L52 G53 G54 R86 K21 R28 L29 G30 G31 R63
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003682 chromatin binding
Biological Process
GO:0070828 heterochromatin organization
Cellular Component
GO:0000786 nucleosome
GO:0000792 heterochromatin
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005721 pericentric heterochromatin
GO:0005730 nucleolus
GO:0009506 plasmodesma
GO:0009536 plastid

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8kcc, PDBe:8kcc, PDBj:8kcc
PDBsum8kcc
PubMed38870940
UniProtQ9FJE8|H2A7_ARATH Probable histone H2A.7 (Gene Name=At5g59870)

[Back to BioLiP]