Structure of PDB 8k87 Chain A

Receptor sequence

>8k87A (length=468) Species: 35554 (Geobacter sulfurreducens) [Search protein sequence]

SQLAAHSTIPEPLLLFKDNRTDTHPLRGLSQYGPYSACFNLPGQVRLAYL
APTEHMRKLDAIVRELQNPATPKEATNYYVEYGGFEKVFKVPLVMPQEHL
RCLALDECHGVAANGNGLALADKIVQSMSGLFRQKHAFDVLLVYLPASWK
KCFEYDGFDLHDRIKAKVAPLNLPIQIINDTALTRQCRANVMWGVSVALY
AKAGGIPWKLADWDKDEAYIGLSYAIKKNAEGQEYTTCCSQVFDPDGTGF
EFVAYDTREFITDRKGNPYLSYQEMQSVLSKSLHLYQSSHNGRMPRKIFI
HKTTHFTEDEIQGAFDSFSSSTEIELVQIIQSTNWYGLKVDGKKGDKPVA
PASYPVDRGLYQPLTESECLLWTQGSVMGVNQQNPGQPVFKEAALTPLPN
PIMLRRFSGNGGWHATCSSILALTKVDWNNNTLYKKLPVTLVYSQVFADV
VKQTPEIVNEIYDYRFFM

3D structure

PDB

8k87 Structural Basis of prokaryotic Argonaute System

Chain

Resolution

2.9 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	A	E79 A80 R190 Y229 I335 S358 Y359 K396 A399 L400	E74 A75 R185 Y224 I330 S353 Y354 K391 A394 L395
BS02	rna	A	F158 D164 H166 Q181 I182 I183 N184 T186 A187 R190 V196 G199 V200 Y240 Y274 Q379 T401 N434 N435 N436 T437 K440 K441 M473	F153 D159 H161 Q176 I177 I178 N179 T181 A182 R185 V191 G194 V195 Y235 Y269 Q374 T396 N429 N430 N431 T432 K435 K436 M468
BS03	MG	A	N434 M473	N429 M468

Gene Ontology

	Molecular Function
GO:0003674	molecular_function

	Biological Process
GO:0008150	biological_process

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:8k87, PDBe:8k87, PDBj:8k87
PDBsum	8k87
PubMed	38923459
UniProt	Q74DF5

[Back to BioLiP]