Structure of PDB 8k06 Chain A

Receptor sequence
>8k06A (length=303) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
SLVKISPQVSEALSNGRAVVALESTIISHGMPYPQNLQTAKEVESIVREN
GAIPATIAILNGVPCIGLSEEELERLASLGKSVQKTAGRDIANVVATRGN
GATTVSATLFFASMVGIQVFVTGGIGGVHRHANHSMDISSDLTALGRTPI
AVISAGVASILDIPKTLEYLETQEVYVAAYKSDEFPAFFTEKSGCKAPSR
VNSPEDCARVIDANMKLNRQAGILFAIPIPKHHSAAGNLIESATQRALTE
AREQNVTGNAETPFLLARVNELTGGTSLAANIALVKNNALIGSQIAVALS
QLM
3D structure
PDB8k06 Structure and function of the pseudouridine 5'-monophosphate glycosylase PUMY from Arabidopsis thaliana.
ChainA
Resolution1.845 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.2.1.70: pseudouridylate synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PSU A E50 T52 K112 T131 V132 S166 D168 L293 E23 T25 K85 T104 V105 S139 D141 L266
Gene Ontology
Molecular Function
GO:0004730 pseudouridylate synthase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0016829 lyase activity
GO:0030597 RNA glycosylase activity
GO:0046872 metal ion binding
Biological Process
GO:0001522 pseudouridine synthesis
Cellular Component
GO:0005777 peroxisome

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8k06, PDBe:8k06, PDBj:8k06
PDBsum8k06
PubMed38117089
UniProtQ84K35|PUMY_ARATH Pseudouridine-5'-phosphate glycosidase (Gene Name=PUMY)

[Back to BioLiP]