Structure of PDB 8ic1 Chain A

Receptor sequence

>8ic1A (length=479) Species: 69365 (Microbacterium arabinogalactanolyticum) [Search protein sequence]

TTSRTPATVVEKLTGPDAPNNTWGRWDIKATDLGIMWDDGAGHVLTAFGN
TFGNSWTGPGGGAPPNGNWRSNVLVRSSDGDLADGMLFDWAAQGPQGVAR
EIIPSKKINGVEITTIPTTGISVGKRQYLGFMSVKQWGPPGVWDTNFAGI
AYSDDGGGTWKVSDTRWENADGHDPFQMQAWVQKGGTIYVFGTQNGRNGP
ASVAKVPASKLLDKSAFRYWNGTDWSRKESDAVPVMDAPMSEMSVQYDAY
SKRFLMMTLSGEDIIMRTATAPEGPWTPAQTVASSTDYPALYGGYFHPWN
KDGEIYFTMSQWNPYNVYLMRLRIDRDGNIIDPNLVTDASFERSTTLGDG
TNGTWAAKPNSGIDNAPAAGFTGDHRAFVRYNSGWRDIWQDVAVERGAKY
RLTGFLRTSVNSDNGFFGARTLDGVPIGEINFHSVGAWTRFTVEFDAGDR
DAVQVFGGVWTNSGDIWMQLDDVSLTKVR

3D structure

PDB

8ic1 Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria.

Chain

Resolution

1.8 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	BXY	A	Y382 N383	Y381 N382
BS02	BXY	A	N361 R381 Y382 D466	N360 R380 Y381 D465
BS03	BXY	A	F379 R381	F378 R380
BS04	BXY	A	D365 F379 R381 W468 Q470	D364 F378 R380 W467 Q469
BS05	BXY	A	D33 G50 N51 I117 W138	D32 G49 N50 I116 W137
BS06	BXY	A	P141 R198 W313	P140 R197 W312
BS07	BXY	A	R198 A291 L292	R197 A290 L291
BS08	BXY	A	N366 A367 P368	N365 A366 P367
BS09	CA	A	S341 E343 T373 H376 D472	S340 E342 T372 H375 D471
BS10	OYO	A	N51 G62 G63 W138 W313 Y316	N50 G61 G62 W137 W312 Y315

External links

PDB	RCSB:8ic1, PDBe:8ic1, PDBj:8ic1
PDBsum	8ic1
PubMed	37726269

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