Structure of PDB 8hpd Chain A

Receptor sequence
>8hpdA (length=212) Species: 325651 (Bryopsis corticulans) [Search protein sequence]
VEFYGPDRALWLGPYSEGAVPSYLTGEFPGDYGWDSAGLSADPETFAANR
ELELIHARWAMLGTVGCLTPEALEKYGGVEFGEAVWFKAGSQIFAEGGLD
YLGNPSLVHAQSILAICWTQVVLMGLAEGYRCSGGPLGEATDPLYPGEAF
DPMGMADDPETFAELKTKEIKNGRLAMFAMFGFFVQSLQTGKGPVECWAE
HIADPVANNGFV
3D structure
PDB8hpd Structural and functional properties of different types of siphonous LHCII trimers from an intertidal green alga Bryopsis corticulans.
ChainA
Resolution2.74 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 0UR A M61 T64 F150 D151 P152 M153 M155 A179 F183 Q186 P194 M61 T64 F150 D151 P152 M153 M155 A179 F183 Q186 P194
BS02 0IE A W34 D35 S36 A37 W59 A60 G63 G66 C67 W86 M177 M180 W34 D35 S36 A37 W59 A60 G63 G66 C67 W86 M177 M180
BS03 CHL A L10 W11 L12 Y15 Y32 W34 L10 W11 L12 Y15 Y32 W34
BS04 CHL A G30 D31 Y32 G33 W34 D35 L39 S40 N49 R50 E53 H56 R174 M177 F178 F181 G30 D31 Y32 G33 W34 D35 L39 S40 N49 R50 E53 H56 R174 M177 F178 F181
BS05 CLA A H56 F181 H56 F181
BS06 CLA A L62 G66 F81 Q92 L99 Y101 L102 L62 G66 F81 Q92 L99 Y101 L102
BS07 CHL A S106 L107 V108 Q111 S112 S106 L107 V108 Q111 S112
BS08 CHL A L99 Q120 L99 Q120
BS09 CHL A F87 G90 F94 Q120 F184 L188 F87 G90 F94 Q120 F184 L188
BS10 CHL A R58 W59 Y130 R131 G135 P136 L137 G138 P146 F150 R58 W59 Y130 R131 G135 P136 L137 G138 P146 F150
BS11 CHL A E51 L52 I55 H56 W59 Q120 G125 E128 R131 E51 L52 I55 H56 W59 Q120 G125 E128 R131
BS12 CLA A R58 M61 Y145 P146 G147 F150 D151 M155 A156 F162 L165 K166 E169 R58 M61 Y145 P146 G147 F150 D151 M155 A156 F162 L165 K166 E169
BS13 CLA A K168 K171 N172 L175 K168 K171 N172 L175
BS14 CLA A K168 N172 L175 K168 N172 L175
BS15 CLA A F178 F181 G182 V185 Q186 T190 C197 H201 N209 G210 F178 F181 G182 V185 Q186 T190 C197 H201 N209 G210
BS16 CHL A H201 I202 P205 F211 H201 I202 P205 F211
BS17 CHL A L114 W118 L114 W118
BS18 CHL A W11 S36 W11 S36
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Mon Feb 17 00:40:46 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8hpd', asym_id = 'A', title = 'Structural and functional properties of differen...m an intertidal green alga Bryopsis corticulans. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8hpd', asym_id='A', title='Structural and functional properties of differen...m an intertidal green alga Bryopsis corticulans. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '8hpd', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='8hpd', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>