Structure of PDB 8gyy Chain A

Receptor sequence
>8gyyA (length=757) Species: 5353 (Lentinula edodes) [Search protein sequence]
TQWPAPLANGGKSWASAFKKAKATVTEMTVEELANITSGVIGLCSGVTGA
VTRLGIPEFCLQDGPIGPRGVHGSSQFPAGLTVAATWDRTLMYARARGMG
QEFHDQGVHLALAPVTGGPLGRTPLNGRGWEGTFADPYACGEASYLSVKG
LTDAGVATVSKHWIAYEQETSRNLYIDIDGVSQADIQLPISSNVDDLTMH
ELYMWSFAEAVRAGTNHIMCSYNRINNTHSCSNAKGLNQLLKTELNFQGG
VVSDWGGQWDSVPAAENGLDVAMPGKGFLGALGDFWGATLVELINNGTVS
EDLVRDKAVRILTGYYYLGQDTNPPPPFVYNTIGAPTLNATSGYRNVRKP
GTAELIKEIGSASVTLLKNTGSLPLKHPQRIAVLGNDATYNVLGPNACGL
ANSACDIDNLNGTLTTGGGSGSALSPYTITPLEALQKRAIEDNAEIAAVV
ANSNTTTGAEDAIAALLPDADVTFVFLNRYSEEGADAPDFSLGGDGDNLM
DLAVTYSSNVVVVIHTTGVVDIEKWADNPNVTAILVAYLPGQEAGNSLVP
VLYGDVAPSGKLPWTWGKSIDDYVPNGVVYTDAYSPQSNFTEGVFIDYRW
FDKMGITPRYEFGFGLSYTTFTYSNLIVDHGRWAKDYSSVMETAEPFAEW
DGTNSLYDVIFTVFATITNTGNLTGSEVAQLYISIPGDNQPVRQLRGFDK
IKDLPVGDSAVVTFPIRRKDVSSWSVVDQLWYVPNGDFLISVGGSSRDLP
LNTTWTP
3D structure
PDB8gyy Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose
ChainA
Resolution2.07 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.21: beta-glucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MAN A T216 A531 D532 Y626 T170 A485 D486 Y580
BS02 MAN A P534 Y626 P488 Y580
BS03 BKR A L220 I222 V227 W301 F324 L328 T383 S466 E529 L174 I176 V181 W255 F278 L282 T337 S420 E483
BS04 XLS A D109 K207 Y268 D300 W301 S466 E529 D63 K161 Y222 D254 W255 S420 E483
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process
GO:0005975 carbohydrate metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:8gyy, PDBe:8gyy, PDBj:8gyy
PDBsum8gyy
PubMed
UniProtG8GLP2

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