Structure of PDB 8e5d Chain A

Receptor sequence
>8e5dA (length=136) Species: 95486 (Burkholderia cenocepacia) [Search protein sequence]
GSYALGPYQISAPQLPAYNGQTVGTFYYVNDAGGLESKVFSSGGPTPYPN
YANAGHVAGQSALFMRDNGISEGLVFHNNPEGTCGFCVNMTETLLPENAK
MTVVPPEGAIPVKRGATGETKVFTGNSNSPKSPHHH
3D structure
PDB8e5d Structural basis of sequence-specific cytosine deamination by double-stranded DNA deaminase toxin DddA.
ChainA
Resolution2.39 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.5.4.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A N1339 Y1340 N1378 M1379 R1403 K1420 N50 Y51 N89 M90 R114 K131
BS02 dna A A1341 H1345 F1375 R1403 A52 H56 F86 R114
BS03 ZN A H1345 C1373 C1376 H56 C84 C87
BS04 MG A E1381 T1382 L1384 N1415 N1417 E92 T93 L95 N126 N128
External links
PDB RCSB:8e5d, PDBe:8e5d, PDBj:8e5d
PDBsum8e5d
PubMed37460895
UniProtP0DUH5|DDDA_BURC1 Double-stranded DNA deaminase toxin A (Gene Name=dddA)

[Back to BioLiP]