Structure of PDB 8dwj Chain A

Receptor sequence
>8dwjA (length=339) Species: 2681598 (Escherichia phage T4) [Search protein sequence]
SIPWIDNEFAYRALAHLPKFTQVNNSSTFKLRFRCPVCGDSKTDQNKARG
WYYGDNNEGNIHCYNCNYHAPIGIYLKEFEPDLYREYIFEIRKEKGKSRP
IEKPKELPKQPEKKIIKSLPSCVRLDKLAEDHPIIKYVKARCIPKDKWKY
LWFTTEWPKLVNSIAPGTYKKEISEPRLVIPIYNANGKAESFQGRALKKD
APQKYITIEAYPEATKIYGVERVKDGDVYVLEGPIDSLFIENGIAITGGQ
LDLEVVPFKDRRVWVLDNEPRHPDTIKRMTKLVDAGERVMFWDKSPWKSK
DVNDMIRKEGATPEQIMEYMKNNIAQGLMAKMRLSKYAK
3D structure
PDB8dwj Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
ChainA
Resolution3.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A S43 D46 R51 Y66 N67 A203 Q205 K206 Y207 S41 D44 R49 Y64 N65 A201 Q203 K204 Y205
BS02 dna A K32 R34 N48 W53 Y55 H64 Y66 H71 Q205 K30 R32 N46 W51 Y53 H62 Y64 H69 Q203
BS03 ZN A C37 C40 C65 C35 C38 C63
Gene Ontology
Molecular Function
GO:0003896 DNA primase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0006269 DNA replication, synthesis of primer
GO:0039693 viral DNA genome replication

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Molecular Function
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Biological Process
External links
PDB RCSB:8dwj, PDBe:8dwj, PDBj:8dwj
PDBsum8dwj
PubMed37474605
UniProtP04520|PRIM_BPT4 DNA primase (Gene Name=61)

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