Structure of PDB 8dge Chain A

Receptor sequence
>8dgeA (length=707) Species: 411476 (Bacteroides ovatus ATCC 8483) [Search protein sequence]
LHDGFNFDPAIPKADEPLTITFKAPEGSNFYGYADDLYLHSGTGANWTGA
PTWGDNQNKYRLKKTKDNVWSITLSSSIRHFYSVAPSTPLQTINLIVRDA
EGSQQTYDYATLVEDSQNGFIWEEPQKAPLPISGEEKEGIHIHSATSIML
VLYDKDSQGGHKDCVFVTGNFNNWKLDSRYMMKYDETNHCWWITLEELTG
ETQFQYFVYSASDGGTYLCDPYCEQALEKGVDTNFPTGAQAPYVSVVSTP
QPYQWSGEFEMKNKENPVIYELLLRDFTSSGNLAGAMEKLPYLKELGIDA
IELMPVQEFAGNDSWGYNTGLYFALDASYGTQNEYKAFIDACHQNGIAVI
FDVVYNHTNNDNPFARMYWDTFNNRPSTKNPWLNAVTPHQKYVFSPDDFN
HTSEQTKAFVKRNLKYLLDTYHIDGFRFDFTKGFTQKQTTGDDDLAATDP
ARVSVLKEYYEAVKAVKEDAMVTMEHFCANEETTLATEGIHFWRNMNHSY
CQSAMGWKDNSDFSGLYDTTRPNQFVGYMESHDEERCAYKQIEYGNGALK
TNLSERLKQLSSNAAFFFTVPGPKMLWQFGEMGYDISIDENGRTGKKPVL
WEYQTERKSLVDIYTKLITLRTTHSDLFNASSQFTWKVSYNDWDNGRTLT
LKAVNGKQLHVYANFTNASIDYTIPEGTWYLYLEPVEGEKKISVPAHEFR
LYTNFAE
3D structure
PDB8dge BoGH13A Sus from Bacteroides ovatus represents a novel alpha-amylase used for Bacteroides starch breakdown in the human gut.
ChainA
Resolution1.89 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A E274 E356 F357 G359 D374 E228 E308 F309 G311 D326
BS02 MN A N404 H437 D446 G481 N356 H389 D398 G433
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Nov 25 06:36:54 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8dge', asym_id = 'A', title = 'BoGH13A Sus from Bacteroides ovatus represents a...or Bacteroides starch breakdown in the human gut.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8dge', asym_id='A', title='BoGH13A Sus from Bacteroides ovatus represents a...or Bacteroides starch breakdown in the human gut.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0005975', uniprot = '', pdbid = '8dge', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005975', uniprot='', pdbid='8dge', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>