Structure of PDB 8bpd Chain A

Receptor sequence
>8bpdA (length=370) Species: 346185 (Flagellimonas eckloniae) [Search protein sequence]
SKWLSGSWGVRLIVEGGVELDKASSYSDWVKGAQNIVDNLPTVGHVFTNF
THRAHGYWFTLRENPYVDVAKEIHPEFVPSLENEKIILDVIDILHKGGKK
VILYIATDGPSARSGTRNNAEYKAAWENYYNAKFDGDEGLAYRTLCKGYI
ERFKGLADGYWLDHVGGIAGELTDFIDMIREVDPSVMIASNGIVENESSN
KSKYFKDENGDDLEVDSDGTNDPDGRKYKIRSFNLNGSYVDFTSGHPTPL
AWGAPPNSWAYEEFTFPEIVDAMASYDPVKHTIKHAWMPMRMKWTSPRAN
LMFDVEQAYRFVRTLTDGGCAITWGNTQTNGSMTKEEMDIMKEVDRRLRM
RPMPDYIPYKRPAGAKLVGE
3D structure
PDB8bpd Structural and functional characterization of the novel endo-alpha (1,4)-fucoidanase Mef1 from the marine bacterium Muricauda eckloniae.
ChainA
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.212: endo-(1->4)-fucoidanase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 3CX A S138 G190 S114 G166
BS02 3CX A Y228 W276 Y204 W252
BS03 3CX A R35 R77 Y128 D187 W318 R11 R53 Y104 D163 W294
BS04 CA A D242 D246 D248 D218 D222 D224
BS05 CA A A136 S138 T140 N142 A112 S114 T116 N118
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8bpd, PDBe:8bpd, PDBj:8bpd
PDBsum8bpd
PubMed37877949
UniProtA0A0N8WFH1

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