Structure of PDB 8b6c Chain A

Receptor sequence

>8b6cA (length=248) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHD
PGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNV
LPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLP
SGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRG
VAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGT

3D structure

PDB

8b6c Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative.

Chain

Resolution

2.79 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	A	G2 R3 V4 G7 Q8 R9 K10 G11 S14 R17 A18 H19 V20 K21 R23 G25 F34 R37 G39 Y40 H50 P52 R54 Y67 R68 F69 K70 K71 R72 T84 G85 F87 Y89 K93 A94 Q95 E118 G121 K125 L126 A127 R128 A129 S130 N132 L150 P151 S152 S154 K156 R174 I175 K177 I179 L180 K181 A182 G183 Y186 H187 K188 K190 K192 R193 N194 W196 R198 V199 R200 G201 V202 A203 M204 N205 P206 V207 E208 H209 G213 G214 N215 H216 Q217 H218 G220 K221 P222 S223 T224 I225 R226 R227 P230 A231 R233 K234 V235 G236 L237 I238 A239 A240 R241 T243 G244 R245	G1 R2 V3 G6 Q7 R8 K9 G10 S13 R16 A17 H18 V19 K20 R22 G24 F33 R36 G38 Y39 H49 P51 R53 Y66 R67 F68 K69 K70 R71 T83 G84 F86 Y88 K92 A93 Q94 E117 G120 K124 L125 A126 R127 A128 S129 N131 L149 P150 S151 S153 K155 R173 I174 K176 I178 L179 K180 A181 G182 Y185 H186 K187 K189 K191 R192 N193 W195 R197 V198 R199 G200 V201 A202 M203 N204 P205 V206 E207 H208 G212 G213 N214 H215 Q216 H217 G219 K220 P221 S222 T223 I224 R225 R226 P229 A230 R232 K233 V234 G235 L236 I237 A238 A239 R240 T242 G243 R244
BS02	MG	A	N194 P197	N193 P196

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

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Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:8b6c, PDBe:8b6c, PDBj:8b6c
PDBsum	8b6c
PubMed	36867692
UniProt	G1TT27\|RL8_RABIT Large ribosomal subunit protein uL2 (Gene Name=RPL8)

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