Structure of PDB 8ai6 Chain A

Receptor sequence
>8ai6A (length=322) Species: 1423 (Bacillus subtilis) [Search protein sequence]
YFQGHMYNKTVSINLDSRCNASCDHCCFSSSPTSTTRMEKEYIRELVTEF
AKNKTIQVISFTGGEVFLDYKFLKELMEIIKPYEKQITLISNGFWGLSKK
KVQEYFHDMNSLNVIALTISYDEYHAPFVKSSSIKNILEHSRKYPDIDIS
LNMAVTKDKMSNHILEELGDSILGVKITKFPMISVGAAKTRIKQENIHKF
YSLEDEDSLHCPGYAIVYHHDGEIYPCCSPAIFETKITLREEYNQSFERT
VEKLNSNLLLFILRKEGFKWFLNILKENNKIEEFDIPYEFSSICGVCGSL
FNSAEKINYFYPYMEKYYNENF
3D structure
PDB8ai6 Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme.
ChainA
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 A C14 A16 C18 H20 C21 S25 G59 N87 H120 C19 A21 C23 H25 C26 S30 G64 N92 H125
BS02 SF4 A C206 P207 C222 S224 F263 C289 C292 C211 P212 C227 S229 F268 C294 C297
BS03 SAH A H20 C21 C22 G58 G59 I85 S115 H120 F175 I178 H25 C26 C27 G63 G64 I90 S120 H125 F180 I183
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding

View graph for
Molecular Function
External links
PDB RCSB:8ai6, PDBe:8ai6, PDBj:8ai6
PDBsum8ai6
PubMed38158457
UniProtQ45595|YYDG_BACSU Putative peptide biosynthesis protein YydG (Gene Name=yydG)

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