Structure of PDB 8a5c Chain A

Receptor sequence
>8a5cA (length=237) Species: 243230 (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539) [Search protein sequence]
APLNAARPAEERAALLAWVKERLHEEYGDQDPTPRRDPMHELISTILSQR
TTHADEEAAYQELRTLGDWDAITLAPTDAVAHAIRRSNLPESKAPRIQET
LRRIKAAPGGYDLDFLRDLPVKDALKWLTDLPGVGVKTASLVLLFNYARP
VFPVDTHVHRVSTRVGVIPRMGEQAAHRALLALLPPDPPYLYELHINFLS
HGRQVCTWTRPKCGKCILRERCDAYALYGDKVPSFSE
3D structure
PDB8a5c Disentangling Unusual Catalytic Properties and the Role of the [4Fe-4S] Cluster of Three Endonuclease III from the Extremophile D. radiodurans.
ChainA
Resolution1.951 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 A C224 P229 C231 C234 R237 C240 C206 P211 C213 C216 R219 C222
BS02 MG A I122 K123 A125 G127 G128 I104 K105 A107 G109 G110
Gene Ontology
Molecular Function
GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003824 catalytic activity
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0006281 DNA repair
GO:0006284 base-excision repair
GO:0006285 base-excision repair, AP site formation
GO:0006289 nucleotide-excision repair

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8a5c, PDBe:8a5c, PDBj:8a5c
PDBsum8a5c
PubMed35807515
UniProtQ9RRQ0

[Back to BioLiP]