Structure of PDB 7yxk Chain A

Receptor sequence
>7yxkA (length=308) Species: 7227 (Drosophila melanogaster) [Search protein sequence]
MSEVERALDVLLQEAEELCIGSSVVELDRIPTALEFCREFYSKNQPVVIR
KALNWPAIGKWTPKYLIEALGDRSVDVAITPNGYADGLATQNGQEYFVLP
LETKMKLSEVVRRLDDPTGAVHYIQKQNSDLPELAADLRVSDLDFAQQSF
NKPPDAVNFWLGDERAVTSMHKDPYENVYCVISGHKDFVLIPPHQLSCVP
RGIYPTGVYKTSDSGQFYIEPLRDEEGSDQFTEWVSVDPLSPDLAKYPEY
ARAKPLKVRVHAGDILYLPNYWFHHVSQSHKCIAVNFWYDLDYDSRYCYY
RMLEQMTS
3D structure
PDB7yxk Conservation of the unusual dimeric JmjC fold of JMJD7 from Drosophila melanogaster to humans.
ChainA
Resolution2.43 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.14.11.-
3.1.1.4: phospholipase A2.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN A H175 D177 H278 H171 D173 H274
BS02 I78 A W164 T172 H175 N181 Y183 K190 H278 V280 W160 T168 H171 N177 Y179 K186 H274 V276
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0016706 2-oxoglutarate-dependent dioxygenase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0106155 peptidyl-lysine 3-dioxygenase activity
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:7yxk, PDBe:7yxk, PDBj:7yxk
PDBsum7yxk
PubMed35410347
UniProtQ9VU77

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